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. 2012 Jun 14;287(32):27033–27046. doi: 10.1074/jbc.M112.370841

TABLE 1.

Sequence alignment of cyclotides observed in P. x hybrida extracts

Peptide Amino acid sequencea,b Expt.c m/z Expt.c mass Theor.c mass Errorc Theor.d mass
Da Da ppm Da
Phyb A -GIGCGESCVWIPCVS-AAIGCSCSNKIC-YRN 3434.47 3434.47 3434.55 −23.29 3068.29
Phyb K -STDCGEPCVYIPCTITALLGCSCLNKVC-VRP 1200.89 3599.67 3599.71 −11.11 3251.46
Phyb M pQSISCAESCVWIPCAT-SLIGCSCVNSRCIYSK 1246.17 3735.51 3735.73 −58.89 3387.47

a Ile and Leu in Phyb M were assigned on the basis of homology to Phyb L.

b Phyb K and Phyb M are acyclic.

c Expt., experimental; Theor., theoretical; linearized peptide masses after reduction and carbamidomethylation of cysteines.

d Theor., theoretical; native peptide masses.