Table 2.
Expression patterns of up-regulated or down-regulated shrimp miRNAs after WSSV infection
|
MiRNA name |
Counts of 0 hpi |
Ratio of counts to 0 hpi at |
|||
|---|---|---|---|---|---|
| 6 hpi | 24 hpi | 48 hpi | |||
|
up-regulation with ≥2 fold |
up-regulation with ≥2 fold |
|
|
|
|
| miR-1 |
1292519 |
1.53 |
1.21 |
2.74 |
|
| miR-2a |
97 |
2.85 |
2.42 |
3.62 |
|
| miR-2b |
37 |
0.86 |
0.7 |
5.1 |
|
| miR-2c |
15 |
0.56 |
0.73 |
23.46 |
|
| miR-7 |
6 |
15.16 |
16 |
14.16 |
|
| miR-34 |
9 |
174.55 |
120.11 |
18.77 |
|
| miR-71 |
590 |
2.85 |
2.19 |
9.03 |
|
| miR-87 |
229 |
5.23 |
2.32 |
2.96 |
|
| miR-100 |
5550 |
0.8 |
0.69 |
20.89 |
|
| miR-133 |
27 |
46.89 |
44.52 |
16.63 |
|
| miR-184 |
1082 |
8.16 |
6.4 |
4.51 |
|
| miR-190 |
389 |
3.67 |
2.79 |
6.69 |
|
| miR-193 |
3 |
24.6 |
13.3 |
42.6 |
|
| miR-252 |
7 |
36.29 |
34.14 |
8.14 |
|
| miR-263a |
23 |
25.61 |
19.74 |
6.7 |
|
| miR-275 |
364 |
18.74 |
10.28 |
87.04 |
|
| miR-315 |
151 |
2.15 |
1.54 |
12.16 |
|
| miR-317 |
121 |
3.79 |
2.63 |
9.02 |
|
| miR-965 |
39 |
1.58 |
1.79 |
2.46 |
|
| miR-993 |
69 |
7.19 |
4.1 |
16.07 |
|
| miR-let7 |
6075 |
46.76 |
40.88 |
18.64 |
|
| miR-281-2* |
1885 |
4.1 |
13.26 |
6.38 |
|
| miR-8* |
787 |
6.42 |
3.82 |
13 |
|
| miR-276a* |
459 |
1.46 |
1.09 |
14.15 |
|
| miR-S2 |
6 |
1.16 |
37 |
0.83 |
|
|
Down-regulation with ≥2 fold |
Down-regulation with ≥2 fold |
|
|
||
| miR-33 |
631 |
0.04 |
0.03 |
1.29 |
|
| miR-79 |
895 |
0.04 |
0.03 |
0.19 |
|
| miR-9 |
6175 |
0.05 |
0.05 |
0.15 |
|
| miR-279 |
2752 |
0.71 |
0.85 |
0.24 |
|
| miR-S5 |
1063 |
0 |
0.06 |
0 |
|
| miR-S12 | 376 | 0 | 0.67 | 0.03 | |
Array data for 31 host miRNAs with high-quality data (total counts ≥200) at different time points after WSSV infection. hpi, hours post infection.