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. 2012 Aug 1;7(8):e42299. doi: 10.1371/journal.pone.0042299

Table 1. List of the quantified proteins in four biological replicates using the post-digest ICPL labeling methodology.

Proteins name Rep 1 Rep 2 Rep 3 Rep 4
Ratio SD # Pept Ratio SD # Pept Ratio SD # Pept Ratio SD # Pept
VAS14_02738 hypothetical protein 0.58 0.00 1 0.57 0.00 1 0.51 1.25 2 0.71 0.00 1
VAS14_16916 phosphocarrier protein HPr 0.62 1.33 3 0.67 1.11 5 0.54 1.21 6 0.44 1.20 5
VAS14_04158 arginine ABC transporter 0.68 0.00 1 0.70 0.00 1 0.70 1.28 2 0.99 0.00 1
VAS14_22197 peptide ABC transporter 0.72 1.04 3 0.67 1.16 2 0.59 1.32 2 0.75 1.20 6
VAS14_20236 phosphoglycerate kinase 0.72 1.41 4 0.92 1.21 18 0.73 1.19 19 0.66 1.24 10
VAS14_17626 asparagine synthetase B 0.73 1.31 6 0.72 1.20 9 0.80 1.16 16 1.01 1.32 12
VAS14_07409 carbamoyl-phosphate synthase small subunit 0.74 1.55 4 0.81 1.37 5 0.85 1.20 6 0.79 1.16 3
VAS14_10219 phosphoenolpyruvate synthase 0.77 1.25 9 0.81 1.31 20 0.84 1.24 26 0.89 1.24 21
VAS14_02983 putative Cold shock-like protein 0.77 1.17 5 0.69 1.20 5 0.64 1.11 5 0.56 1.13 6
VAS14_17766 succinyl-CoA synthetase alpha subunit 0.78 1.27 4 0.83 1.20 9 0.88 1.16 16 0.51 1.60 8
VAS14_07734 putative glutamate synthase, large subunit 0.78 1.21 10 0.83 1.42 16 0.85 1.24 22 0.84 1.36 18
VAS14_21427 phosphoenolpyruvate carboxylase 0.79 1.28 15 0.87 1.22 18 0.75 1.33 25 0.91 1.52 22
VAS14_14614 putative Cold shock-like protein 0.79 1.13 4 0.75 1.20 4 0.81 1.10 4 0.59 1.06 3
VAS14_08175 3-isopropylmalate dehydrogenase 0.80 1.10 5 0.77 1.27 6 0.82 1.45 8 0.81 1.26 4
VAS14_07404 carbamoyl-phosphate synthase large subunit 0.80 1.08 12 0.86 1.39 18 0.87 1.16 13 0.88 1.23 15
VAS14_08340 inorganic pyrophosphatase 0.84 1.30 6 0.80 1.22 6 0.78 1.14 7 0.86 1.26 8
VAS14_21527 triosephosphate isomerase 0.84 1.13 4 0.71 1.09 7 0.84 1.15 7 0.71 1.32 6
VAS14_10584 3-deoxy-7-phosphoheptulonate synthase 0.95 1.09 10 0.82 1.26 11 0.80 1.28 14 0.80 1.29 12
VAS14_05653 putative superoxide dismutase 0.98 0.00 1 0.88 1.23 3 0.78 1.14 5 0.76 1.18 5
VAS14_18824 putative membrane protease subunits 1.21 1.54 6 1.21 1.03 3 1.28 1.48 6 1.43 1.16 6
VAS14_07124 molecular chaperone DnaK 1.24 1.23 25 1.14 1.24 29 1.06 1.27 27 0.89 1.28 25
VAS14_10439 putative ATP-dependent RNA helicase 1.26 1.05 3 1.40 1.32 8 1.70 2.12 9 1.30 1.23 6
VAS14_12874 hypothetical outer membrane protein OmpA 1.28 1.23 7 1.33 1.29 13 0.96 1.19 13 1.07 1.17 8
VAS14_06218 trigger factor 1.31 1.23 17 1.19 1.24 27 1.18 1.22 30 1.15 1.21 29
VAS14_09799 glyoxalase family protein 1.33 1.14 3 1.15 1.04 2 1.21 1.23 2 1.79 1.56 2
VAS14_05963 hypothetical outer membrane protein OmpA 1.36 1.31 3 1.37 1.42 4 1.00 1.10 6 1.11 1.22 5
VAS14_07334 translation initiation factor IF-2 1.45 1.38 17 1.27 1.31 15 1.35 1.56 26 1.23 1.46 13
VAS14_18834 RNA-binding protein Hfq 1.46 1.69 2 3.08 0.00 1 1.54 0.00 1 3.45 0.00 1
VAS14_00891 putative glutaredoxin 1 1.47 1.04 2 1.32 1.08 2 0.94 0.00 1 1.41 1.31 2
VAS14_06208 ATP-dependent protease ATP-binding subunit 1.49 1.14 2 1.26 1.31 5 1.35 1.17 7 1.80 0.00 1
VAS14_21207 putative FKBP-type peptidyl-prolyl cis-trans isomerase 1 1.50 1.66 2 1.62 1.23 7 1.10 1.26 7 1.18 1.21 5
VAS14_07384 ompL_phopr porin-like protein L precursor 1.56 1.11 3 0.96 1.22 3 1.35 1.18 5 1.76 1.27 3
VAS14_16369 putative GTP-binding protein 1.64 1.47 3 1.32 1.17 3 1.53 1.17 2 1.45 1.18 2
VAS14_06783 putative antioxidant, AhpC/Tsa family protein 1.65 1.37 17 1.67 1.24 20 1.41 1.15 17 1.58 1.16 21
VAS14_16756 Na(+)-translocating NADH-quinone reductase subunit F 1.65 1.29 3 1.37 1.28 6 1.18 1.41 12 1.76 1.11 6
VAS14_14319 hypothetical protein 1.81 0.00 1 1.70 1.34 2 1.79 1.06 2 1.57 1.17 3
VAS14_06728 putative inositol monophosphate family protein 1.91 1.23 2 1.54 1.79 5 1.86 1.12 8 1.61 0.00 1
VAS14_11709 putative lipoprotein 2.01 1.32 3 3.31 1.06 3 2.01 1.25 4 2.09 2.33 3
VAS14_07364 putative cell division protein FtsH 2.32 1.26 4 2.28 1.23 5 1.07 1.22 10 1.66 1.19 7
VAS14_20496 recombinase A 2.79 1.15 3 2.91 1.29 8 2.62 1.09 17 3.35 0.00 1

Proteins significantly different from the control within a given biological replicate are indicated with bold characters. Ratio: UVB/Dark, SD: standard deviation, #Pept: number of peptides used for protein quantification.