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. 2012 Mar 31;8(3):905–916. doi: 10.1007/s12015-012-9364-9

Table 1.

List of oligonucleotides used for Real time-PCR. Ct and efficiency values are indicated

Gene Forward primer Reverse primer Size (bp) Ct SD Ct Efficencya
ACTB AGAGCCTCGCCTTTGCCGATCC CATGCCGGAGCCGTTGTCGAC 101 16.10 0.025 1.971
CCL2 TCTCAGTGCAGAGGCTCGCGA CCACTTCTGCTTGGGGTCAGCAC 119 17.01 0.006 1.977
CCL3 TTCAGAAGGACACGGGCAGCAGACA GGAATCTGCCGGGAGGTGTAGCT 216 29.64 0.050 1.862
CCL5 TACATTGCCCGCCCACTGCC GGGTTGGCACACACTTGGCG 119 23.82 0.052 2.061
CCL7 CAGCTGCTTTCAGCCCCCAGG GCTTCCCGGGGACAGTGGCTA 148 23.93 0.032 1.923
CCL8 TGGCAGCCACTTTCAGCCCT GCACAGACCTCCTTGCCCCG 190 27.98 0.167 2.040
CCL20 TCTGCGGCGAATCAGAAGCAGC TTCATTGGCCAGCTGCCGTGT 110 21.19 0.068 2.16
CLDN1 CCGGGTTGCCCACCTGCAAA CGTACATGGCCTGGGCGGTC 258 24.49 0.148 1.862
CLDN14 GTCGCTGTGGGCAGGTGGTC AGCCTCCCCTTCCCAGCCTG 192 30.48 0.093 2.084
CSF2 TGCAGCATCTCTGCACCCGC AGGCAGGTCGGCTCCTGGAG 176 24.47 0.188 1.708
CSF3 AGACCCATGGCTGGACCTGCC GTGGCACACTCACTCACCAGCTTC 218 31.56 0.043 2.026
CX3CL1 CTGGCTGGACAGCACCACGG GCTCCTTCGGGTCGGCACAG 175 25.96 0.087 1.880
CXCL1 AGCCTGCAACATGCCAGCCA TGTGCACATACATTCCCCTGCCT 94 21.72 0.036 1.848
CXCL10 TGCAAGCCAATTTTGTCCACGTGT GCAGCCTCTGTGTGGTCCATCC 200 24.10 0.051 1.956
CXCL11 TGTCTTTGCATAGGCCCTGGGGT AGCCTTGCTTGCTTCGATTTGGGA 164 29.72 0.178 1.821
CXCL3 AATGTAAGGTCCCCCGGACCCC ACCACCCTGCAGGAAGTGTCAA 199 20.92 0.036 2.023
CXCL5 AATCTCCGCTCCTCCACCCAGT GCTCTCTCAACACAGCAGCGGC 201 28.49 0.050 1.614
CXCL6 GCACGAGGAAACCAAAGTGCTCTG GTGCAACGCAGCTCTGTCAGCA 234 26.37 0.071 1.890
ELF3 ATTTAGAGCCGGGTAGGGGAGCG GTTGCAGCCATGAGGCTACCGGAGT 132 25.68 0.088 1.912
GAPDH CCCCTCTGCTGATGCCCCCA TGACCTTGGCCAGGGGTGCT 122 16.79 0.015 1.998
IBSP GGAGTACGAATACACGGGCGCC GGTAGCCGGATGCAAAGCCAGA 222 27.12 0.049 2.018
ICAM1 CTGGTCCTGCTCGGGGCTCT GGGCTGGTCACAGGAGGTGC 126 22.42 0.094 1.638
ICAM4 AATACACTTTGCGCTGCCACGTG GGCTCCAAGCGAGCATCAGTGT 264 28.16 0.116 2.057
IL11 TGACCCGCTCTCTCCTGGCG GCACGTGCCGCAGGTAGGAC 192 24.23 0.163 1.803
IL12A CCCAAAACCTGCTGAGGGCCG TGGAGGCCAGGCAACTCCCAT 219 29.08 0.047 1.985
IL15 GCTGCTGGAAACCCCTTGCCAT TAGGTGCTTTGGGCCAACTGGG 214 28.78 0.035 1.899
IL1B AGGCACAAGGCACAACAGGCT AACAACTGACGCGGCCTGCC 277 21.12 0.110 1.965
IL23A TGGCTGTGACCCCCAAGGACTC TGCCATGGCTGGCTGGGACT 246 27.01 0.053 1.893
IL32 TTTGTGCCAGGAAGACTGCGTGC GGCTCGACATCACCTGTCCACG 215 24.41 0.078 2.004
IL34 GAACACCACCATGCCCCGGG CAGCCTGGTGACGTTGGCGA 250 24.59 0.078 1.853
IL6 CATTCTGCCCTCGAGCCCACC GGCAGCAGGCAACACCAGGA 139 17.08 0.088 1.955
IL7 GCTGCTCGCAAGTTGAGGCAATTT TTGTTGGTTGGGCTTCACCCAGG 157 26.58 0.213 1.974
IL8 CGTGGCTCTCTTGGCAGCCTTC TTCCTTGGGGTCCAGACAGAGCTC 229 15.88 0.707 2.005
ITGA9 GCAGTGACCGCTGGCCACTT GCGCACAAGGAGGAGCCGAA 182 27.63 0.098 1.969
ITGB3 TGCCGCCCTGCTCATCTGGA TCCTGCAATCGTGGCACAGGC 239 22.43 0.008 2.192
ITGB8 CTAGCGACACTCGGCCCGC CTGGACCCAGCGCAAGGCAC 292 27.76 0.023 1.850
MMP1 GTGTCTCACAGCTTCCCAGCGAC GCACTCCACATCTGGGCTGCTTC 238 25.01 0.084 2.006
NOD2 AGGCCTACCCGCAGATGCCA GTGGGAGAGAGGCTGGCCCA 298 28.04 0.172 2.062
SDC4 CGGAGTCGCCGAGTCGATCC GGCTCCCAGACCCTGCCCTC 248 20.51 0.030 1.925
SELECTIN TTGTTCCTGCCAGCAGCTGCC AGGGCCAGAGACCCGAGGAG 164 17.64 0.085 2.030
SERPINE1 AGGACGAACCGCCAATCGCAAG ACCCTCACCCCGAAGTCTGAGG 167 25.86 0.034 2.120
TCAM1P CGAGCTTGGCTGTGGCCTCC TCTCCGCCATCCCAGCCTCC 225 27.05 0.078 1.856
TLR2 AGGCAGCGAGAAAGCGCAGC CCCCCAAGACCCACACCATCCA 253 31.23 0.352 2.162
TLR4 CCCTGCGTGGAGGTGGTTCCTA CTCCCAGGGCTAAACTCTGGATGGG 280 26.45 0.024 2.007
TNF CCCTCTGGCCCAGGCAGTCA ATGGGTGGAGGGGCAGCCTT 235 21.58 0.019 2.100
VCAM1 AGGTGACGAATGAGGGGACCACA CCAGCCTCCAGAGGGCCACT 181 17.31 0.010 2.039

aPCR efficiency of each PCR was estimated from a serially diluted standard curves obtained from a reference MSC cDNA sample. The cycle number of the crossing point CP vs. Log (dilution factor) were plotted to calculate the slope. The efficiency of each PCR was then calculated with the equation \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ {\hbox{E}} = {1}{0^{[ - {1}/{\rm{slope}}]}} $$\end{document}