Table 1.
Gene | Forward primer | Reverse primer | Size (bp) | Ct | SD Ct | Efficencya |
---|---|---|---|---|---|---|
ACTB | AGAGCCTCGCCTTTGCCGATCC | CATGCCGGAGCCGTTGTCGAC | 101 | 16.10 | 0.025 | 1.971 |
CCL2 | TCTCAGTGCAGAGGCTCGCGA | CCACTTCTGCTTGGGGTCAGCAC | 119 | 17.01 | 0.006 | 1.977 |
CCL3 | TTCAGAAGGACACGGGCAGCAGACA | GGAATCTGCCGGGAGGTGTAGCT | 216 | 29.64 | 0.050 | 1.862 |
CCL5 | TACATTGCCCGCCCACTGCC | GGGTTGGCACACACTTGGCG | 119 | 23.82 | 0.052 | 2.061 |
CCL7 | CAGCTGCTTTCAGCCCCCAGG | GCTTCCCGGGGACAGTGGCTA | 148 | 23.93 | 0.032 | 1.923 |
CCL8 | TGGCAGCCACTTTCAGCCCT | GCACAGACCTCCTTGCCCCG | 190 | 27.98 | 0.167 | 2.040 |
CCL20 | TCTGCGGCGAATCAGAAGCAGC | TTCATTGGCCAGCTGCCGTGT | 110 | 21.19 | 0.068 | 2.16 |
CLDN1 | CCGGGTTGCCCACCTGCAAA | CGTACATGGCCTGGGCGGTC | 258 | 24.49 | 0.148 | 1.862 |
CLDN14 | GTCGCTGTGGGCAGGTGGTC | AGCCTCCCCTTCCCAGCCTG | 192 | 30.48 | 0.093 | 2.084 |
CSF2 | TGCAGCATCTCTGCACCCGC | AGGCAGGTCGGCTCCTGGAG | 176 | 24.47 | 0.188 | 1.708 |
CSF3 | AGACCCATGGCTGGACCTGCC | GTGGCACACTCACTCACCAGCTTC | 218 | 31.56 | 0.043 | 2.026 |
CX3CL1 | CTGGCTGGACAGCACCACGG | GCTCCTTCGGGTCGGCACAG | 175 | 25.96 | 0.087 | 1.880 |
CXCL1 | AGCCTGCAACATGCCAGCCA | TGTGCACATACATTCCCCTGCCT | 94 | 21.72 | 0.036 | 1.848 |
CXCL10 | TGCAAGCCAATTTTGTCCACGTGT | GCAGCCTCTGTGTGGTCCATCC | 200 | 24.10 | 0.051 | 1.956 |
CXCL11 | TGTCTTTGCATAGGCCCTGGGGT | AGCCTTGCTTGCTTCGATTTGGGA | 164 | 29.72 | 0.178 | 1.821 |
CXCL3 | AATGTAAGGTCCCCCGGACCCC | ACCACCCTGCAGGAAGTGTCAA | 199 | 20.92 | 0.036 | 2.023 |
CXCL5 | AATCTCCGCTCCTCCACCCAGT | GCTCTCTCAACACAGCAGCGGC | 201 | 28.49 | 0.050 | 1.614 |
CXCL6 | GCACGAGGAAACCAAAGTGCTCTG | GTGCAACGCAGCTCTGTCAGCA | 234 | 26.37 | 0.071 | 1.890 |
ELF3 | ATTTAGAGCCGGGTAGGGGAGCG | GTTGCAGCCATGAGGCTACCGGAGT | 132 | 25.68 | 0.088 | 1.912 |
GAPDH | CCCCTCTGCTGATGCCCCCA | TGACCTTGGCCAGGGGTGCT | 122 | 16.79 | 0.015 | 1.998 |
IBSP | GGAGTACGAATACACGGGCGCC | GGTAGCCGGATGCAAAGCCAGA | 222 | 27.12 | 0.049 | 2.018 |
ICAM1 | CTGGTCCTGCTCGGGGCTCT | GGGCTGGTCACAGGAGGTGC | 126 | 22.42 | 0.094 | 1.638 |
ICAM4 | AATACACTTTGCGCTGCCACGTG | GGCTCCAAGCGAGCATCAGTGT | 264 | 28.16 | 0.116 | 2.057 |
IL11 | TGACCCGCTCTCTCCTGGCG | GCACGTGCCGCAGGTAGGAC | 192 | 24.23 | 0.163 | 1.803 |
IL12A | CCCAAAACCTGCTGAGGGCCG | TGGAGGCCAGGCAACTCCCAT | 219 | 29.08 | 0.047 | 1.985 |
IL15 | GCTGCTGGAAACCCCTTGCCAT | TAGGTGCTTTGGGCCAACTGGG | 214 | 28.78 | 0.035 | 1.899 |
IL1B | AGGCACAAGGCACAACAGGCT | AACAACTGACGCGGCCTGCC | 277 | 21.12 | 0.110 | 1.965 |
IL23A | TGGCTGTGACCCCCAAGGACTC | TGCCATGGCTGGCTGGGACT | 246 | 27.01 | 0.053 | 1.893 |
IL32 | TTTGTGCCAGGAAGACTGCGTGC | GGCTCGACATCACCTGTCCACG | 215 | 24.41 | 0.078 | 2.004 |
IL34 | GAACACCACCATGCCCCGGG | CAGCCTGGTGACGTTGGCGA | 250 | 24.59 | 0.078 | 1.853 |
IL6 | CATTCTGCCCTCGAGCCCACC | GGCAGCAGGCAACACCAGGA | 139 | 17.08 | 0.088 | 1.955 |
IL7 | GCTGCTCGCAAGTTGAGGCAATTT | TTGTTGGTTGGGCTTCACCCAGG | 157 | 26.58 | 0.213 | 1.974 |
IL8 | CGTGGCTCTCTTGGCAGCCTTC | TTCCTTGGGGTCCAGACAGAGCTC | 229 | 15.88 | 0.707 | 2.005 |
ITGA9 | GCAGTGACCGCTGGCCACTT | GCGCACAAGGAGGAGCCGAA | 182 | 27.63 | 0.098 | 1.969 |
ITGB3 | TGCCGCCCTGCTCATCTGGA | TCCTGCAATCGTGGCACAGGC | 239 | 22.43 | 0.008 | 2.192 |
ITGB8 | CTAGCGACACTCGGCCCGC | CTGGACCCAGCGCAAGGCAC | 292 | 27.76 | 0.023 | 1.850 |
MMP1 | GTGTCTCACAGCTTCCCAGCGAC | GCACTCCACATCTGGGCTGCTTC | 238 | 25.01 | 0.084 | 2.006 |
NOD2 | AGGCCTACCCGCAGATGCCA | GTGGGAGAGAGGCTGGCCCA | 298 | 28.04 | 0.172 | 2.062 |
SDC4 | CGGAGTCGCCGAGTCGATCC | GGCTCCCAGACCCTGCCCTC | 248 | 20.51 | 0.030 | 1.925 |
SELECTIN | TTGTTCCTGCCAGCAGCTGCC | AGGGCCAGAGACCCGAGGAG | 164 | 17.64 | 0.085 | 2.030 |
SERPINE1 | AGGACGAACCGCCAATCGCAAG | ACCCTCACCCCGAAGTCTGAGG | 167 | 25.86 | 0.034 | 2.120 |
TCAM1P | CGAGCTTGGCTGTGGCCTCC | TCTCCGCCATCCCAGCCTCC | 225 | 27.05 | 0.078 | 1.856 |
TLR2 | AGGCAGCGAGAAAGCGCAGC | CCCCCAAGACCCACACCATCCA | 253 | 31.23 | 0.352 | 2.162 |
TLR4 | CCCTGCGTGGAGGTGGTTCCTA | CTCCCAGGGCTAAACTCTGGATGGG | 280 | 26.45 | 0.024 | 2.007 |
TNF | CCCTCTGGCCCAGGCAGTCA | ATGGGTGGAGGGGCAGCCTT | 235 | 21.58 | 0.019 | 2.100 |
VCAM1 | AGGTGACGAATGAGGGGACCACA | CCAGCCTCCAGAGGGCCACT | 181 | 17.31 | 0.010 | 2.039 |
aPCR efficiency of each PCR was estimated from a serially diluted standard curves obtained from a reference MSC cDNA sample. The cycle number of the crossing point CP vs. Log (dilution factor) were plotted to calculate the slope. The efficiency of each PCR was then calculated with the equation