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. 2012 Apr 23;11(8):394–410. doi: 10.1074/mcp.M111.016493

Table I. SRM determined protein fold change versus time matched vehicle control after drug treatment. Protein fold change is reported as the ratio among drug treatment groups of median summed peptide abundances; HK, housekeeping protein (control); PX, proteomics label-free LC-MS; GX, gene expression (transcriptomics); LIT, literature source; Veh/Veh indicates the fold change of the day 15 vehicle over the day 4 vehicle animals where no (drug induced) effect is expected; bold font indicates 0.5 > fold change > 2.0; T-test p values are indicated by *<0.05, **<0.01, ***<0.001.

Uniprot acc. Protein Source Peptides Low dose
High dose
Veh/Veh
Day 4 Day 15 Day 4 Day 15
O35077 Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic HK 1 1.15 1.05 1.17 1.26 0.98
P04642 l-lactate dehydrogenase A chain HK 3 0.92 0.9 1.18 1.01 0.92
P10719 ATP synthase subunit beta, mitochondrial HK 5 1.02 1.08 1.01 1.02 0.89
P15999 ATP synthase subunit alpha, mitochondrial HK 5 1.08 1.08 1 0.82 0.76
P85108 Tubulin beta-2A chain HK 1 1.15 0.97 0.88 0.9 0.86
P05178 Cytochrome P450 2C6 PX 3 1.06 1.59** 3.43*** 6.28*** 0.65*
P23965 3,2-trans-enoyl-CoA isomerase, mitochondrial PX 1 1.18 1.45 6.37*** 10.46*** 1
Q4V8F9 Hydroxysteroid dehydrogenase-like protein 2 PX 1 0.85 1.02 4.11*** 2.93*** 1.44
Q64591 2,4-dienoyl-CoA reductase, mitochondrial PX 2 1.07 1.33* 2.95*** 6.21** 1.01
O88267 Acyl-coenzyme A thioesterase 1 PX + GX 1 0.71 0.31 1188.27*** 690.64** 1.18
P04903 Glutathione S-transferase alpha-2 PX + GX 1 0.99 1.18 2.81*** 5.96*** 0.89
P07687 Epoxide hydrolase 1 PX + GX 3 0.98 1.16 2.86*** 6.07*** 0.72
P07896 Peroxisomal bifunctional enzyme PX + GX 4 1.19 1.36 17.23*** 10.13*** 0.72
P08516 Cytochrome P450 4A10 PX + GX 2 1.01 1.3 19.49*** 13.89*** 0.85
P09875 UDP-glucuronyltransferase 2B1 PX + GX 1 1.08 0.82 1.23* 1.64** 1.19
P14141 Carbonic anhydrase 3 PX + GX 5 1.01 1.09 0.66* 0.5*** 0.73
P21775 3-ketoacyl-CoA thiolase A, peroxisomal PX + GX 4 1.03 1.07 7.88*** 7.22*** 0.85
P38918 Aflatoxin B1 aldehyde reductase member 3 PX + GX 1 1.24 0.86 3.64*** 6.77** 0.79
P51647 Retinal dehydrogenase 1 PX + GX 2 1.66 2.06 13.19*** 34.41*** 0.7
Q6I7R1 Dehydrogenase/reductase (SDR family) member 7 PX + GX 2 1.08 0.82 0.81 0.36** 0.98
O55171 Acyl-coenzyme A thioesterase 2, mitochondrial GX 1 1.1 1.02 4.87*** 4.91** 0.94
P00176 Cytochrome P450 2B1 GX 1 1.35 1.22* 54.5*** 26.37** 0.95
P04182 Ornithine aminotransferase, mitochondrial GX 2 0.91 1.29 0.21*** 0.42** 0.87
P04906 Glutathione S-transferase P GX 1 1.01 1.11 0.93 1.81 0.98
P05369 Farnesyl pyrophphate synthase GX 1 0.84 1.18 0.63 1.97* 0.93
P06757 Alcohol dehydrogenase 1 GX 3 1.21 1.21 1.21 1.94** 0.71
P13697 NADP-dependent malic enzyme GX 2 1.38 0.88 1.92** 6.62** 1.15
P36365 Dimethylaniline monooxygenase [N-oxide-forming] 1 GX 1 0.96 0.94 0.63 0.47 0.53
Q5XI60 Receptor expression-enhancing protein 6 GX 1 0.87 0.9 1.72*** 2.7*** 0.86
Q64654 Lanterol 14-alpha demethylase GX 1 0.87 0.94 0.84 1.53* 0.78
Q6TEK3 Vitamin K epoxide reductase complex subunit 1-like protein 1 GX 1 1.06 1.14 1.28 1.43* 0.93
Q9EQ76 Dimethylaniline monooxygenase [N-oxide-forming] 3 GX 5 1.06 1.12 0.81 0.39*** 1.15
B4F7D0 Prodh protein (Fragment) GX 1 0.75 1.13 0.59 0.76 0.89
Q5XFW5 FK506 binding protein 11 GX 1 0.99 0.97 1.29* 1.93* 0.8*
P01048 T-kininogen 1 LIT [30] 1 1.14 0.93 1.33 1.21 1.08
P55159 Serum paraoxonase/arylesterase 1 LIT [30] 2 1.13 1.11 1.55** 1.38 1.09
O89049 Thioredoxin reductase 1, cytoplasmic LIT [11] 2 1.02 1.04 1.61** 1.96*** 0.94
P04041 Glutathione peroxidase 1 LIT [11] 4 1.2 0.94 1.14 0.66* 1.02
P04762 Catalase LIT [11] 5 1.08 1.17 1.12 1.25 0.81*
P04785 Protein disulfide-isomerase LIT [11] 3 0.98 1.01 0.92 1.42** 0.89
P06761 78 kDa glucose-regulated protein LIT [11] 3 0.98 0.93* 1.08 1.54*** 0.85
P07632 Superoxide dismutase [Cu-Zn] LIT [11] 3 0.98 1.01 0.96 1.03 0.88
P07895 Superoxide dismutase [Mn], mitochondrial LIT [11] 2 0.97 1 0.9 1.12 0.97
P14480 Fibrinogen beta chain LIT [11] 3 1.03 0.78 0.89 1.19 1.16
P18418 Calreticulin LIT [11] 1 1.01 0.99 0.99 1.36** 0.88
P35565 Calnexin LIT [11] 2 0.99 1.04 0.98 1.13 0.94*
P48199 C-reactive protein LIT [11] 2 0.81 0.68 1.21 1.03 1.05
P31044 Phphatidylethanolamine-binding protein 1 LIT [7] 2 1.05 0.96 0.9* 0.89 0.87*