Table 1.
Performance of top scoring methods across all alignment performance tests
| Method | Rank in Benchmark Test | Rank in Tree Resolution Test | Rank in Topological Congruence Test | Rank in Structural Accuracy Test | Mean rank |
|---|---|---|---|---|---|
| MergeAlign91 |
8 |
20 |
2 |
9 |
9.8 |
| MergeAlign80 |
9 |
8 |
9 |
14 |
10.0 |
| MergeAlign70 |
5 |
14 |
17 |
5 |
10.3 |
| MergeAlign30 |
1 |
23 |
10 |
11 |
11.3 |
| MergeAlign60 |
3 |
31 |
6 |
8 |
12.0 |
| CROG050101 |
13 |
5 |
29 |
6 |
13.3 |
| CombAlign40 |
2 |
32 |
20 |
4 |
14.5 |
| DOSZ010104 |
11 |
44 |
4 |
1 |
15.0 |
| MergeAlign50 |
7 |
26 |
21 |
10 |
16.0 |
| OVEJ920101 |
20 |
25 |
8 |
12 |
16.3 |
| JOHM930101 |
21 |
12 |
15 |
18 |
16.5 |
| MergeAlign20 |
6 |
11 |
37 |
13 |
16.8 |
| BLOSUM80 |
22 |
22 |
1 |
24 |
17.3 |
| BLOSUM62 |
18 |
10 |
27 |
22 |
19.3 |
| MergeAlign10 |
10 |
6 |
57 |
7 |
20.0 |
| PRLA000102 |
12 |
33 |
24 |
19 |
22.0 |
| CSEM940101 |
24 |
15 |
47 |
3 |
22.3 |
| DOSZ010103 |
4 |
27 |
60 |
2 |
23.3 |
| PRLA000101 |
17 |
9 |
59 |
15 |
25.0 |
| HENS920103 | 26 | 34 | 12 | 32 | 26.0 |