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. 2012 Jul 26;5:52. doi: 10.1186/1754-6834-5-52

Table 1.

Identified hemicellulose-degrading proteins and spectrum counts on 1, 3, 7, and 14 days

 
 
 
 
Spectrum countc
 
Accession numbera GH familya Identified proteinsa MW (kDa)b Day 1 Day 3 Day 7 Day 14 SignalPd
AN8401
GH3
Beta-1,4-xylosidase
82
60
98
107
132
Y
AN2217
GH3
Beta 1,4-Xylosidase
83
39
48
58
79
Y
AN2359
GH3
Beta-xylosidase
87
53
115
57
0
Y
AN1818
GH10
Beta-1,4-endoxylanase
34
101
142
576
720
Y
AN7401
GH10
Beta-1,4-endoxylanase
38
0
4
11
31
Y
AN3613
GH11
Beta-1,4-endoxylanase A precursor
24
188
174
194
140
Y
AN7152
GH27
Alpha-1,4-galactosidase
69
67
138
124
121
Y
AN8138
GH36
Alpha-1,4-galactosidase
82
0
0
27
24
Y
AN7117
GH39
Xylosidase
50
0
9
13
12
Y
AN8007
GH43
Endoarabinase
34
6
29
20
19
Y
AN2533
GH43
Alpha N-arabinofuranosidase
36
0
13
10
7
Y
AN7781
GH43
Arabinosidase, putative
38
32
74
52
60
Y
AN2534
GH43
Endoarabinase
41
0
13
12
7
Y
AN10919
GH43
1,4-endoxylanase D precursor
42
2
39
50
48
Y
AN7313
GH43
Alpha L-arabinofuranosidase C
52
0
5
0
0
Y
AN7275
GH43
Putative xylosidase
55
0
0
0
24
Ye
AN8477
GH43
Xylosidase/arabinofuranosidase
60
37
69
64
97
Nf
AN5727
GH53
Beta-1,4-endogalactanase
41
11
19
16
18
Y
AN1571
GH54
Alpha-arabinofuranosidase
53
45
98
80
96
Y
AN2632
GH62
Arabinoxylan/arabinofuranohydrolase
33
13
30
29
21
Y
AN7908
GH62
Arabinoxylan/arabinofuranohydrolase
36
27
106
90
113
Y
AN9286
GH67
Alpha-glucuronidase
94
14
17
69
104
Y
AN5061
GH74
Xyloglucanase
88
0
0
0
7
Y
AN2060
GH93
Exo-arabinanase
43
17
24
24
27
Y
AN6093
CE1
Acetyl xylan esterase
34
0
9
6
4
Y
AN1320
 
Beta-1,4-endoxylanase B
28
10
36
46
55
Y
AN6673
 
Alpha-fucosidase
92
-
-
30
31
Y
AN9380   Bifunctional xylanase/ deacetylase 26 10 6 9 14 Y

aAccession numbers along with protein information and glycosyl hydrolase (GH) family information was obtained from Pedant [23].

bHypothetical molecular weight of the proteins.

cQuantifying changes in protein abundance between samples from different time points was done using the spectral count method, yielding a semiquantitative analysis.

dSignalP was used to predict secretion signals [23,24].

eSignalP as reported at [25].

fNot found by SignalP (N-terminal may be incorrectly annotated , a novel signal peptide may be present, or the protein is normally intracellular but was released by autolysis).