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. 2012 Aug 7;7(8):e42876. doi: 10.1371/journal.pone.0042876

Table 3. Identification of the DR1–3 sites on the DNA promoters recognized byPhoP.

DR1 DR2 DR3
msl3 TCTGGTAGC 8/9: 89% CATGGCAAC 7/9: 78% AATGTGTTC 5/9: 56%
fadD21 TGTTTCAGC 7/9: 78% ATGCACAGC 6/9: 67% ATGATCAGC 7/9: 78%
lipF ACGTACAGC 8/9: 89% ACTCCCAGT 6/9: 67% CCTGTGATC 6/9: 67%
pks2 CCCAGTAGC 6/9: 67% CCGCTTAGA 6/9: 67% AGACACAGC 5/9: 56%
phoP ACTGTTAGC 9/9: 100% ACTGGCAAC 9/9: 100% -
consensus sequence of phoP A C T/G T/G T/G Py A Pu C

For each DNA sequence shown to bind PhoP-P, sequences with a complete or partial match to the DR1, DR2 and DR3 sites were identified (underlined). The degree of conservation of the consensus sequence was calculated and is shown as the ratio of matching nucleotides to the consensus: % identity.