Table 1. Microarray expression clusters showing significant overlap with genes up or down regulated upon germline ablation in P. pacificus.
DAF-16, TGF-beta and Dauer related clusters | ||
Expression cluster | sigScore.UP | sigScore.DOWN |
Murphy_etal_cgc5976_Class1 | 1.35 | 0 |
Murphy_etal_cgc5976_Class2 | 0 | 1.55 |
Sinha_etal_ppa_dauers_UP | 4.97 | 0 |
Sinha_etal_ppa_dauers_DOWN | 29.91 | 302.83 |
Roberts_etal_2010_DBL-1-DOWN | 0 | 49.64 |
Roberts_etal_2010_DBL-1-UP | 0 | 12.24 |
Significance scores are −log10 of the p-values obtained in a 2×2 Fisher's exact test, and have been set to zero in case of non-significant enrichment where p-value >0.05.
Expression clusters derived from our as yet unpublished data on pathogen response of wild-type P. pacificus to Serratia marcescens, Xenorhabdus nematophila, Staphylococcus aureus, and Bacillus thuringiensis DB27 (AS, RR, II and RJS, manuscript submitted).