Table 1.

Oligonucleotides used in this work

Oligonucleotide designation	Sequence (5′ to 3′)	Purpose
P50F	TGTAACAGCTGAATGTAACAAAATTATATATTTAAATCTTTGAAATATTG	DNase footprinting
P50R	CAATATTTCAAAGATTTAAATATATAATTTTGTTACATTCAGCTGTTACA	DNase footprinting
Bio-LHB3F	biotin-TAAAAAAGTTGGCAAAAATAGT	Labeled probe B-3.1
P3-1R	CAATTATTTCACAACCAGTAAAACTT	Labeled probe B-3.1
IRcomp1F	AAAATAGTTTTTGCTATATACTTATTTTTA	Competitor cB-1
IRcomp1R	TAAAAATAAGTATATAGCAAAAACTATTTT	Competitor cB-1
IRcomp2F	TAAATAACCATAGGAGTAAAAAGATGGAAA	Competitor cB-2
IRcomp2R	TTTCCATCTTTTTACTCCTATGGTTATTTA	Competitor cB-2
IRcomp3F	ATCTTTCAAACAATAATAATCCACAAGAAA	Competitor cB-3
IRcomp3R	TTTCTTGTGGATTATTATTGTTTGAAAGAT	Competitor cB-3
Bio-4-6	biotin-TAATAGAGAATTTAGCTAAGCCCTATTTTTTTG	Labeled probe B-4
4-7	CGGAAGCTTATTTTTGCTTGAATATTATTTTGT	Labeled probe B-4
Fla3	GGGTCTCAAGCGTCTTGG	flaB Q-RT-PCR
Fla4	GAACCGGTGCAGCCTGAG	flaB Q-RT-PCR
ssbP-QF	GGTATGCTTTAGTTGCAGCTCTTGG	ssbP Q-RT-PCR
ssbP-QR	GTTGTAGGGCTATTTACCCAGTCTT	ssbP Q-RT-PCR
nucP-QF	GTAGCGACTCTAATTATATGAGTAG	nucP Q-RT-PCR
ERP-1	ATGTAACAGCTGAATG	cp32-1 Q-PCR
ERP-108	CTTAAATTATGTCTAGTATCACTC	cp32-1 Q-PCR
ERP-1	ATGTAACAGCTGAATG	cp32-3 Q-PCR
ERP-58	AGTCTAATCATATCCTCAGACAGG	cp32-3 Q-PCR
ERP-401	AATATTGCAATTATTAGCTGTTG	cp32-4 Q-PCR
ERP-404	ATTCATTCTTAGGGTTTTCATATC	cp32--4 Q-PCR
nucP-QR	CACTTTTGATATTAAGGCCTCATCT	nucP Q-RT-PCR
erpA-141F	AGAATAATAGTAATAACTGGG	erpA Q-RT-PCR
erpA-142R	CTAGTGATATTGCATATTCAG	erpA Q-RT-PCR
Bio104F	TGTTAAAATGTAACAGCTGAAT	SsbP function
104R	ATTCAGCTGTTACATTTTATCT	SsbP function
A43R	GCAATATTTCAAAGATTTAAA	SsbP function
A15R	TCATACCACAATACATAATAA	SsbP function
A21R	TAATAAATGCATATTTCAAA	SsbP function
M13-R	GGAAACAGCTATGACCATG	Amplify linear DNA used in NucP functional assays
BSV19	TAAGATAGGTAAGAAATTACCCGG	Amplify linear DNA used in NucP functional assays