Table 1.
Cyanuric acid hydrolase/barbiturase family proteins identified in this study and identities to enzymes of known function
Clade and organisma | GI no. | Locus name | % Identity to: |
|||
---|---|---|---|---|---|---|
AtzD | TrzD | Moorella cyanuric acid hydrolase | Barbiturase | |||
1 | ||||||
Clostridium asparagiforme DSM 15981 | 225388419 | CLOSTASPAR_02155 | 51 | 57 | 65 | 45 |
Moorella thermoacetica ATCC 39073 | 83590946 | Moth_2120 | 58 | 63 | 100 | 46 |
Paenibacillus sp. JDR-2 | 251798893 | Pjdr2_4927 | 50 | 55 | 58 | 43 |
Bacillus cellulosilyticus DSM 2522 | 317127947 | Bcell_1233 | 37 | 42 | 41 | 33 |
Acidovorax citrulli strain 12227 | 3659839 | 58 | 100 | 63 | 45 | |
Enterobacter cloacae strain 99 | 13022197 | 58 | 100 | 63 | 45 | |
Aminobacter aminovorans (formerly Comamonas sp. A2) | 14029763 | Partial sequence | 58 | 100 | 63 | 45 |
Bradyrhizobium japonicum USDA 110 | 27382392 | blr7281 | 59 | 55 | 59 | 42 |
Pseudomonas sp. ADP | 32455884 | 100 | 58 | 58 | 43 | |
Pseudomonas nitroreducens | 285310188 | 100 | 58 | 58 | 43 | |
Comamonas sp. A2 | 254972448 | 100 | 58 | 58 | 43 | |
Arthrobacter sp. MCMB-436 | 47059636 | 100 | 58 | 58 | 43 | |
Arthrobacter AD25 | 117583156 | 99.7 | 58 | 58 | 43 | |
Micromonas sp. strain RCC299 | 255079800 | MICPUN_59838 | 45 | 41 | 42 | 32 |
Acidithiobacillus ferrooxidans ATCC 53993 and ATCC 23270 | 198283056 218519570 | Lferr_0922 AFE_0779 | 42 | 46 | 46 | 34 |
Methylobacterium radiotolerans JCM 2831 | 170751160 | Mrad2831_4776 | 51 | 55 | 51 | 42 |
Oceanicola granulosus HTCC2516 | 89068460 | OG2516_12979 | 44 | 44 | 44 | 37 |
Agrobacterium vitis S4 | 222106665 | Avi_5653 | 48 | 50 | 56 | 43 |
Rhizobium leguminosarum bv. viciae 3841 | 116254793 | pRL100353 | 48 | 52 | 54 | 43 |
Rhizobium leguminosarum bv. trifolii WSM1325 | 241554234 | Rleg_6452 | 48 | 52 | 53 | 44 |
Methylobacterium sp. 4-46 | 170741972 | M446_3816 | 46 | 47 | 47 | 37 |
Bradyrhizobium sp. strain BTAi1 | 148252873 | BBta_1315 | 47 | 47 | 52 | 38 |
Bradyrhizobium sp. strain ORS278 | 146343122 | BRADO6319 | 47 | 48 | 54 | 40 |
Azorhizobium caulinodans ORS 571 | 158425516 | AZC_3892 | 50 | 52 | 55 | 41 |
2 | ||||||
Nocardioides JS614 | 119718489 | Noca_4270 | 43 | 44 | 45 | 72 |
Thermobispora bispora DSM 43833 | 296270184 | Tbis_2213 | 43 | 49 | 50 | 77 |
Streptosporangium roseum DSM 43021 | 271967801 | Sros_6541 | 42 | 46 | 48 | 74 |
Geodermatophilus obscurus DSM 43160 | 284988804 | Gobs_0181 | 42 | 46 | 45 | 80 |
Catenulispora acidiphila DSM 44928 | 256391076 | Caci_1879 | 45 | 47 | 47 | 81 |
Nakamurella multipartita DSM 44233 | 258655427 | Namu_5328 | 43 | 45 | 46 | 84 |
Nocardioides sp. strain JS614 | 119715741 | Noca_1505 | 43 | 46 | 46 | 86 |
Intrasporangium calvum DSM 43043 | 315588294 | Intca_1068 | 43 | 47 | 48 | 80 |
Janibacter sp. strain HTCC2649 | 84497968 | JNB_17813 | 42 | 45 | 45 | 85 |
Rhodococcus erythropolis JCM 3132 | 46395595 | 43 | 45 | 46 | 100 | |
Rhodococcus erythropolis SK121 | 229318388 | RHOER0001_3381 | 43 | 45 | 46 | 99.7 |
Rhodococcus erythropolis PR4 | 226309369 | RER_58820 | 43 | 45 | 46 | 99.7 |
Rhodococcus opacus B4 | 226362213 | ROP_27990 | 42 | 46 | 45 | 92 |
Rhodococcus jostii RHA1 | 111022263 | RHA1_ro05296 | 45 | 46 | 45 | 93 |
Saccharomonospora viridis DSM 43017 | 257056105 | Svir_20970 | 44 | 46 | 47 | 85 |
Azorhizobium caulinodans ORS 571 | 158424827 | AZC_3203 | 49 | 48 | 52 | 43 |
Frankia sp. EuI1c | 280963003 | FraEuI1c_3137 | 36 | 36 | 40 | 38 |
Organisms containing homologs are in the same order as in the phylogenetic tree in Fig. 2. Organisms in which proteins were experimentally assayed are highlighted in bold.