Table 1.

Next-Generation Sequencing Total Reads, Consensus Sequence Data, and Viral Load for Superinfection Cases

ID	Baseline Subtype	Baseline Total Reads	Baseline Consensus Sequences	Superinfecting (SI) Subtype	Follow-up Total Reads	Follow-up Consensus Sequences	Consensus Sequences Identified as SI Strain, %	Baseline Viral Load	Follow-up Viral Load
1	D	10 150	90	D	6007	51	82.4	5.72a	5.34
2	D	13 628	124	D	2666	25	12.0	4.89a	5.41
3	D	11 128	78	D	2950	9	100	5.36a	3.33
4	D	11 784	44	D	12 212	85	100	3.51	6.22
5	D	13 798	93	A	11 592	93	69.9	4.18	4.27
6	D	25 049	119	A	14 559	92	69.6	3.36a	3.83
7	D	8263	42	A	5516	43	81.4	3.26	5.19

^a Due to sample availability, 4 baseline viral load levels were determined from samples taken <1 month after the baseline sample.