Table 2.
ORF | Upstream sequence |
---|---|
slr9003a | TCCAACAAAAAAAAGCTTTTCAGGAGGGAATTAAGATTGCTGCAGTAAAAAACGTAAGAAGTTTAGTTGACGCTAAAAAACTTACCTACAGACAATAACCCGGCCCAAAAAGCCAACAAAATACTTCAAAAATATTGTCTCTACTGTAGCTCTAAAAATTCCCAAAAGAAAAGCGGTCAACTCTTGAACCCGAGACCGCT |
pSysA_116 | ATATTTCTGGACGTGGAATGACTCTTGTTCAGGTTTATGACACTGTCAGCAATTGAGATACTTTTGCTGATCGTTTCAGTCCCCTAACGGGGAAAAGAGGGTGTTGAACGAGCCATGGGGTCACTATTGACCACCTCAGGCGCGTTTCAGTCCCCTGACGGGGAAAAGAGGGTGTTGAACCTTGGAAGAAGTTTCCCCTT |
slr9002 | ACGCACGATGACGTATGACCCTTTTAGCACGGTAGGGAGCGTGATAATCTTCTGCAACACCTATATAGTATTGTTGCGATCGCGAGCGATGGCGTATGACCGGCAATAAGCTACACTGCGCCGATTCCAGCAAAGATAATCCCCTAAGCAACGCAATAATCTTCTGCGAACCTTATATAAGGTTCTGCATATAACGCACG |
sll9006 | TTGGCTAGGGAATCCTTGGAAAATTCCCCTATCCCGGTAAGGAATCTTTCAAAGCCCAATACTTTAAGGAAGTGAACGGGGACGGTGAGAGTCTTCCGGCTAGCATCCTTGGCACAAACCTTTCCATCTTCCCCGGCCAAATTTTGGAGCCTTTGGCTGTCCCTTGCCTGTAAAAATTCTGCACCGGTGGTGAAGTAATA |
pSysA_145 | ATATTTCTGGACGTGGAATGACTCTTGTTCAGGTTTATGACACTGTCAGCAATTGAGATACTTTTGCTGATCGTTTCAGTCCCCTAACGGGGAAAAGAGGGTGTTGAACGAGCCATGGGGTCACTATTGACCACCTCAGGCGCGTTTCAGTCCCCTGACGGGGAAAAGAGGGTGTTGAACCTTGGAAGAAGTTTCCCCTT |
sll1982 | TCCCTGGCAATTACGCTCAAAACGCAACTCTCGATTGTTCAAACAGAGTTGATAAAACTGCTCATCGGAAAGGGATAGGCTGTCAAGTTTGACGGTTATGGCGGCGGGCATTGGCTTTACCCCAAAGGCATTGATGTGGCATTGGCTCCCATTCTAAGTGATGTTTACGGTGACAGAATACCTATCGCTCTTCTATCATT |
slr9101b | AAATATGGCATTTCATCTTTTCAGGTTTCCCCAAGGTTTCAACTTTCCTCCTTATATTTATTACTGAGGGATAAGTCGCGGATGACAAAATTTGCTGAAACCCTTACCAGATAAGGCATAGAAGCCTATTGACAAAGTAGAAACCCTCTAGCTAAGCTTTGAGTGTCACTTCAAAAACTCAATATCTAGAGGGCTCCAAG |
ssr9005a | TAAGGATGAAGTGCAGGGCATTATTGACCGCTACAGGGAAGACTTACTGGCAGGAAGACAGCTCCAAGATGTTCCCAGCTCCTACGAGGTCAAAACGGCGATCGCCATTCTGACGGAGGCACTCAGCCTTAAAGCCAATGCCGGTGGAGCCATCAAAGCAAAAATCAGAGAAGCCCTAGCTATCTTGGAAAGGAACTGAA |
pSysA_39 | GGATTAGTAGAAGGAAAGATTGCCGACCGTTCAGGACAATATGCTGGGAGCGATGGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGCTGTTGGCGAAACAGGAAAAATCTACGTAACAGAAGAGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGAAGTATTAAAGGAGTTGGGCGGTGGCTAGTAACA |
sll5036 | ATGCCTTCTTTTGCTAGGGAATCCTTTACTAATCCGATAGCTTCATCAAATCCTACCAGCAATTTTTTACTAAAGTAATACATTTTATATCTCTGATTTTTATTGAACTAGTCCTTGCCAAATCGAACAAGCACCAATATTATAAGAATATAACTACATAGTTGTATTCGTCAATAGTTTTTGGGGGGAGGGAGTTTAAA |
pSysA_27 | CTTCAGCAGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGTAGACATTGTTGAAGAACTTGGACTGATGGAAGAAGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGAACGGGCTGGGTCTGGAACCGGAATTCGTGTCTATTGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGTCAAGTCTTC |
ssl9001 | TGCGTGTCAGCAACAGACCTATAGGTGTTGCAGTAGATTATCGCGTTCCCTACCGTGCTAGCTTTGCTCTGATAGGGTCAATGTGGTTTTTTGCCGGTCATACTTCATAACGCTTTTCTACGGGAGTACCCTAGGGTAGTCGCAGTAGATTATCGTGCTTCCCAGCGTGCTAAAACTGGCTTGATAGGGGCAATGTAGGT |
sll8019 | TTAAGAGAGGTAATTAACCTAACTTAACAAGAACATCGAGTTCTTAACGTACACCCCAGAAAAAGTTAAAGCCACCTGGCAAAGCGTGTTTCTCAGGCACGCCACAGGTAGCTACACAGACTAAAATCTTATGTTGTTAGTGTAGCATGCCAATTTGCCGGATAGCTCCTCCTGGGAAAAATTAGGAGAGTATCTAAGCA |
pSysA_25 | CTTCAGCAGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGTAGACATTGTTGAAGAACTTGGACTGATGGAAGAAGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGAACGGGCTGGGTCTGGAACCGGAATTCGTGTCTATTGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGTCAAGTCTTC |
slr0915 | GTTGTGACCATTGCAGTAAAGTACCGCCCGTATACTTCGAAAATCCCTAAAATTCTTACTCTTCAGTGCATAGACTATGGGATGAATCTGCCCTAAAAATAAAGTTTGGCAAAAATTCCCCCGATCAGTTATGATATTCGAAGCGACGCGGGATAGAGCAGTCTGGTAGCTCGTCGGGCTCAGGTCGCAAGATGTAAACC |
pCA24_1b | TATGGTCATTCAACGCCCCCTAATTAGTCCCTAAACCCTGCCAAATATGGCATTTCATCTTTTCAGGTTTCCCCAAGGTTTCAACTTTCCTCCTTATATTTATTACTGAGGGATAAGTCGCGGATGACAAAATTTGCTGAAACCCTTACCAGATAAGGCATAGAAGCCTATTGACAAAGTAGAAACCCTCTAGCTAAGCT |
pSysA_24c | GGATTAGTAGAAGGAAAGCCACCACCACCACCACGATTAATCAGCAATTATTAGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGCTGATAGATCGTAGCGGAATGCTATGGGATGCCTTAGTTGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGTTCTGAGGTTCTTTCTAAAATTCTTCCCTATATT |
ssr9004a | ACTAAGCGACATTATGGCCCCGCCAATATTGACCCCGATGGGCGATCGGCTATTTTTTCCCGGTGGTTTGAGCGGGATTCTATTTTGTATCACTCTGATACCGTATCCACTGAATCCTTATTAATTAATCAAGCCTAGGAACTGGATACCAAAAACAGGGAGTTATGATGGGAATATAATCCCGTTAACAGGCTAAACCC |
pSysA_34 | TCGCCGGGATTAGTAGAAGGAAAGACCACTCGACGATCAGATCTTCATCAATCAACCGAAGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGTCGGAGCCAGGCCCACCAAAAGCCGCTTGGTAGGATTGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGCCGACTTTTGGATCGATTAGAATCCGACG |
pSysA_22c | CCTTAGTTGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGTTCTGAGGTTCTTTCTAAAATTCTTCCCTATATTTTGGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGCCACATTCATCGCTACAGACTTAGAAGGTAGTTACGAGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGCTAGCCT |
This ORF appears to be in an operon, with slr9003 at the 5′ end.
The predicted ORFs slr9101 and PCA24_1 overlap, and the latter includes an additional 42 nucleotides at its 5′ end.
This ORF appears to be in an operon, with pSysA_24 at the 5′ end.