Table 2.
Upstream sequences of high-scoring SPPS genes
| ORF | Upstream sequence |
|---|---|
| slr9003a | TCCAACAAAAAAAAGCTTTTCAGGAGGGAATTAAGATTGCTGCAGTAAAAAACGTAAGAAGTTTAGTTGACGCTAAAAAACTTACCTACAGACAATAACCCGGCCCAAAAAGCCAACAAAATACTTCAAAAATATTGTCTCTACTGTAGCTCTAAAAATTCCCAAAAGAAAAGCGGTCAACTCTTGAACCCGAGACCGCT |
| pSysA_116 | ATATTTCTGGACGTGGAATGACTCTTGTTCAGGTTTATGACACTGTCAGCAATTGAGATACTTTTGCTGATCGTTTCAGTCCCCTAACGGGGAAAAGAGGGTGTTGAACGAGCCATGGGGTCACTATTGACCACCTCAGGCGCGTTTCAGTCCCCTGACGGGGAAAAGAGGGTGTTGAACCTTGGAAGAAGTTTCCCCTT |
| slr9002 | ACGCACGATGACGTATGACCCTTTTAGCACGGTAGGGAGCGTGATAATCTTCTGCAACACCTATATAGTATTGTTGCGATCGCGAGCGATGGCGTATGACCGGCAATAAGCTACACTGCGCCGATTCCAGCAAAGATAATCCCCTAAGCAACGCAATAATCTTCTGCGAACCTTATATAAGGTTCTGCATATAACGCACG |
| sll9006 | TTGGCTAGGGAATCCTTGGAAAATTCCCCTATCCCGGTAAGGAATCTTTCAAAGCCCAATACTTTAAGGAAGTGAACGGGGACGGTGAGAGTCTTCCGGCTAGCATCCTTGGCACAAACCTTTCCATCTTCCCCGGCCAAATTTTGGAGCCTTTGGCTGTCCCTTGCCTGTAAAAATTCTGCACCGGTGGTGAAGTAATA |
| pSysA_145 | ATATTTCTGGACGTGGAATGACTCTTGTTCAGGTTTATGACACTGTCAGCAATTGAGATACTTTTGCTGATCGTTTCAGTCCCCTAACGGGGAAAAGAGGGTGTTGAACGAGCCATGGGGTCACTATTGACCACCTCAGGCGCGTTTCAGTCCCCTGACGGGGAAAAGAGGGTGTTGAACCTTGGAAGAAGTTTCCCCTT |
| sll1982 | TCCCTGGCAATTACGCTCAAAACGCAACTCTCGATTGTTCAAACAGAGTTGATAAAACTGCTCATCGGAAAGGGATAGGCTGTCAAGTTTGACGGTTATGGCGGCGGGCATTGGCTTTACCCCAAAGGCATTGATGTGGCATTGGCTCCCATTCTAAGTGATGTTTACGGTGACAGAATACCTATCGCTCTTCTATCATT |
| slr9101b | AAATATGGCATTTCATCTTTTCAGGTTTCCCCAAGGTTTCAACTTTCCTCCTTATATTTATTACTGAGGGATAAGTCGCGGATGACAAAATTTGCTGAAACCCTTACCAGATAAGGCATAGAAGCCTATTGACAAAGTAGAAACCCTCTAGCTAAGCTTTGAGTGTCACTTCAAAAACTCAATATCTAGAGGGCTCCAAG |
| ssr9005a | TAAGGATGAAGTGCAGGGCATTATTGACCGCTACAGGGAAGACTTACTGGCAGGAAGACAGCTCCAAGATGTTCCCAGCTCCTACGAGGTCAAAACGGCGATCGCCATTCTGACGGAGGCACTCAGCCTTAAAGCCAATGCCGGTGGAGCCATCAAAGCAAAAATCAGAGAAGCCCTAGCTATCTTGGAAAGGAACTGAA |
| pSysA_39 | GGATTAGTAGAAGGAAAGATTGCCGACCGTTCAGGACAATATGCTGGGAGCGATGGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGCTGTTGGCGAAACAGGAAAAATCTACGTAACAGAAGAGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGAAGTATTAAAGGAGTTGGGCGGTGGCTAGTAACA |
| sll5036 | ATGCCTTCTTTTGCTAGGGAATCCTTTACTAATCCGATAGCTTCATCAAATCCTACCAGCAATTTTTTACTAAAGTAATACATTTTATATCTCTGATTTTTATTGAACTAGTCCTTGCCAAATCGAACAAGCACCAATATTATAAGAATATAACTACATAGTTGTATTCGTCAATAGTTTTTGGGGGGAGGGAGTTTAAA |
| pSysA_27 | CTTCAGCAGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGTAGACATTGTTGAAGAACTTGGACTGATGGAAGAAGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGAACGGGCTGGGTCTGGAACCGGAATTCGTGTCTATTGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGTCAAGTCTTC |
| ssl9001 | TGCGTGTCAGCAACAGACCTATAGGTGTTGCAGTAGATTATCGCGTTCCCTACCGTGCTAGCTTTGCTCTGATAGGGTCAATGTGGTTTTTTGCCGGTCATACTTCATAACGCTTTTCTACGGGAGTACCCTAGGGTAGTCGCAGTAGATTATCGTGCTTCCCAGCGTGCTAAAACTGGCTTGATAGGGGCAATGTAGGT |
| sll8019 | TTAAGAGAGGTAATTAACCTAACTTAACAAGAACATCGAGTTCTTAACGTACACCCCAGAAAAAGTTAAAGCCACCTGGCAAAGCGTGTTTCTCAGGCACGCCACAGGTAGCTACACAGACTAAAATCTTATGTTGTTAGTGTAGCATGCCAATTTGCCGGATAGCTCCTCCTGGGAAAAATTAGGAGAGTATCTAAGCA |
| pSysA_25 | CTTCAGCAGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGTAGACATTGTTGAAGAACTTGGACTGATGGAAGAAGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGAACGGGCTGGGTCTGGAACCGGAATTCGTGTCTATTGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGTCAAGTCTTC |
| slr0915 | GTTGTGACCATTGCAGTAAAGTACCGCCCGTATACTTCGAAAATCCCTAAAATTCTTACTCTTCAGTGCATAGACTATGGGATGAATCTGCCCTAAAAATAAAGTTTGGCAAAAATTCCCCCGATCAGTTATGATATTCGAAGCGACGCGGGATAGAGCAGTCTGGTAGCTCGTCGGGCTCAGGTCGCAAGATGTAAACC |
| pCA24_1b | TATGGTCATTCAACGCCCCCTAATTAGTCCCTAAACCCTGCCAAATATGGCATTTCATCTTTTCAGGTTTCCCCAAGGTTTCAACTTTCCTCCTTATATTTATTACTGAGGGATAAGTCGCGGATGACAAAATTTGCTGAAACCCTTACCAGATAAGGCATAGAAGCCTATTGACAAAGTAGAAACCCTCTAGCTAAGCT |
| pSysA_24c | GGATTAGTAGAAGGAAAGCCACCACCACCACCACGATTAATCAGCAATTATTAGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGCTGATAGATCGTAGCGGAATGCTATGGGATGCCTTAGTTGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGTTCTGAGGTTCTTTCTAAAATTCTTCCCTATATT |
| ssr9004a | ACTAAGCGACATTATGGCCCCGCCAATATTGACCCCGATGGGCGATCGGCTATTTTTTCCCGGTGGTTTGAGCGGGATTCTATTTTGTATCACTCTGATACCGTATCCACTGAATCCTTATTAATTAATCAAGCCTAGGAACTGGATACCAAAAACAGGGAGTTATGATGGGAATATAATCCCGTTAACAGGCTAAACCC |
| pSysA_34 | TCGCCGGGATTAGTAGAAGGAAAGACCACTCGACGATCAGATCTTCATCAATCAACCGAAGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGTCGGAGCCAGGCCCACCAAAAGCCGCTTGGTAGGATTGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGCCGACTTTTGGATCGATTAGAATCCGACG |
| pSysA_22c | CCTTAGTTGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGTTCTGAGGTTCTTTCTAAAATTCTTCCCTATATTTTGGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGCCACATTCATCGCTACAGACTTAGAAGGTAGTTACGAGTTTCAGTCCCGATCGCCGGGATTAGTAGAAGGAAAGCTAGCCT |
a
This ORF appears to be in an operon, with slr9003 at the 5′ end.
b
The predicted ORFs slr9101 and PCA24_1 overlap, and the latter includes an additional 42 nucleotides at its 5′ end.
c
This ORF appears to be in an operon, with pSysA_24 at the 5′ end.