Table 3.
Additional large chromosomal deletions in P. furiosus COM1 strain relative to the NCBI reference strain
| Gene | Gene annotationa | Deletion length (bp) | Operon positionb | Predicted locationc |
|---|---|---|---|---|
| PF0073 | Beta-glucosidase (CelB) | 774 of 1,419 (3′ end) | Cyt | |
| PF1249d | ABC transporter | Complete | 1 of 2 | Cyt |
| PF1250 | Hypothetical protein | Complete | 2 of 2 | Exc |
| PF1251 | <Alpha-galactosidase, NEW3 domain> | Complete | 1 of 2 | Cyt |
| PF1252 | Hypothetical protein | Complete | 2 of 2 | Mem |
| PF1253 | [Aromatic aminotransferase II (56)] | Complete | Cyt | |
| PF1254 | Sodium-dependent transporter | 904 of 1,737 (5′ end) | 1 of 2 | Mem |
a
Annotations are NCBI gene names (no brackets) and literature cited (square brackets), except for hypothetical genes, for which the best InterPro (angle brackets) match is given if available.
b
Operon predictions are from reference 55 based on the NCBI reference sequence.
c
Predicted cellular location; for an explanation, see footnote d of Table 2.
d
Adjacent to transposase (PF1248, ISPfu3) in both COM1 and reference sequences.