Table 4.
Gene | Gene annotationa | No. of identical residuesd | Alignment length (amino acids)d | Identity (%)d | Operon positionb | Predicted locationc |
---|---|---|---|---|---|---|
PF0054 | AsnC family transcriptional regulator | 91 | 155 | 58.7 | 6 of 7 | Cyt |
PF0067 | Cobalt ABC transporter | 157 | 243 | 64.6 | 1 of 2 | Mem |
PF0147 | Potassium channel-like protein | 23 | 205 | 11.2 | 2 of 2 | Cyt |
PF0225 | N-Acetyltransferase | 111 | 201 | 55.2 | 1 of 2 | Cyt |
PF0228 | Hypothetical protein | 49 | 89 | 55.1 | 2 of 3 | Cyt |
PF0244 | Hypothetical protein | 38 | 89 | 42.7 | Cyt | |
PF0314 | Signal peptidase | 58 | 173 | 33.5 | 2 of 3 | Cyt |
PF0334 | Flagellum-like protein | 24 | 194 | 12.4 | 2 of 6 | Exc |
PF0351 | Hypothetical protein | 22 | 285 | 7.7 | Cyt | |
PF0352 | [CRISPR-associated protein, Cmr1-2 (21)] | 189 | 451 | 41.9 | Cyt | |
PF0363 | Beta-galactosidase | 11 | 775 | 1.4 | 7 of 7 | Cyt |
PF0423 | Hypothetical protein | 45 | 117 | 38.5 | 1 of 3 | Cyt |
PF0424 | Hypothetical protein | 34 | 172 | 19.8 | 2 of 3 | Cyt |
PF0439 | Hypothetical protein | 297 | 401 | 74.1 | Cyt | |
PF0472 | <Class III signal peptide motif> | 42 | 54 | 77.8 | 2 of 2 | Exc |
PF0524 | <Ribbon-helix-helix (Met_repress_like)> | 57 | 72 | 79.2 | 1 of 4 | Cyt |
PF0611 | Hypothetical protein | 295 | 382 | 77.2 | Cyt | |
PF0622 | Hypothetical protein | 7 | 33 | 21.2 | Cyt | |
PF0710 | <Transcription repressor, DNA binding> | 79 | 157 | 50.3 | 3 of 3 | Cyt |
PF0764 | DEXX-box ATPase | 232 | 434 | 53.5 | Cyt | |
PF0777 | Hypothetical protein | 191 | 215 | 88.8 | Mem | |
PF0785.2n | Hypothetical protein | 148 | 192 | 77.1 | NAf | |
PF0873 | Hypothetical protein | 36 | 196 | 18.4 | Cyt | |
PF0874 | Membrane dipeptidase | 9 | 379 | 2.4 | 1 of 2 | Cyt |
PF0901 | Hypothetical protein | 121 | 142 | 85.2 | Cyt | |
PF0960 | Hypothetical protein | 15 | 112 | 13.4 | 2 of 2 | Exc |
PF1075 | Hypothetical protein | 3 | 219 | 1.4 | Mem | |
PF1109 | <Carbohydrate-binding domain (CARDB)> | 959 | 1,132 | 84.7 | 1 of 2 | Exc |
PF1113 | <tRNA amidotransferase GAD domain> | 199 | 223 | 89.2 | 1 of 3 | Cyt |
PF1182 | <Thioredoxin-like fold> | 7 | 126 | 5.6 | Cyt | |
PF1182.1n | Hypothetical protein | 53 | 169 | 31.4 | NA | |
PF1206 | <Nucleic acid binding, PIN, PH0500> | 15 | 156 | 9.6 | 1 of 3 | Cyt |
PF1748 | Sulfate permease, ABC transporter | 321 | 543 | 59.1 | 4 of 6 | Mem |
PF1749 | Sulfate transport integral membrane protein | 10 | 228 | 4.4 | 5 of 6 | Mem |
PF1761 | <Putative cell wall binding repeat 2> | 204 | 389 | 52.4 | 1 of 2 | Exc |
PF1935e | Amylopullulanase | 1,114 | 1,355 | 82.2 | 3 of 6 | Exc |
Annotations are NCBI gene names (no brackets) and literature cited (square brackets), except for hypothetical genes, for which the best IPR (angle brackets) match is given if available.
Operon predictions from reference 55 based on the NCBI reference sequence.
Predicted cellular location; for an explanation, see footnote d of Table 2.
Based on Needleman-Wunsch global alignment with the NCBI reference sequence.
A fusion of PF1934 and PF1935 was previously reported (35). A longer product, which is closer in length to those in other pyrococci, was found in COM1.
NA, not applicable.