Table 1.
Bacterial strains used for in silico analysis in this studya
Species | Strain ID | Biological source | Geographical source | Relevant characteristic | Reference |
---|---|---|---|---|---|
Bacterial strains used in in silico analysis | |||||
C. sakazakii | ATCC BAA-894 | Infant | Tennessee, USA | 32 | |
C. sakazakii | 2151 | CSF | United States | This study | |
C. turicensis | z3032 | Blood | Zurich, Switzerland | 74 | |
C. malonaticus | LMG 23826 | Breast abscess | United States | 34 | |
C. dublinensis subsp. dublinensis | LMG 23823 | Milk powder production facility | Dublin, Ireland | 34 | |
C. dublinensis subsp. lactaridi | LMG 23825 | Milk powder production facility | Zimbabwe | 34 | |
C. dublinensis subsp. lausennensis | LMG 23824 | Water fountain | Lausanne, Switzerland | 34 | |
C. universalis | NCTC 9529 | Water | London, England | 34 | |
C. muytjensii | ATCC 51329 | Unknown | Unknown | 34 | |
Additional bacterial strains used for experimental analysis | |||||
C. turicensis | 3032.2A | C. turicensis z3032 cured of pCTU1 | 23 | ||
C. sakazakii | BAA-894.3 | C. sakazakii ATCC BAA-894 cured of pESA3 | 23 | ||
C. muytjensii | E488 | Unknown | Lausanne, Switzerland | Lacks pESA3-/pCTU1-like plasmid | 23, 75 |
C. muytjensii | E456 | Unknown | Lausanne, Switzerland | Lacks pESA3-/pCTU1-like plasmid | 23, 75 |
C. dublinensis subsp. dublinensis | CDC 0743-75 | Human, clinical | Wisconsin, USA | Lacks pESA3-/pCTU1-like plasmid | 23 |
C. sakazakii | CDC 9363-75 | Unknown | New York, USA | Lacks pESA3-/pCTU1-like plasmid | 23 |
C. muytjensii | CDC 3523-75 | Human, clinical | Arizona, USA | Harbors pESA3-/pCTU1-like plasmid | 23 |
Vibrio vulnificus | UNCC913 | Unknown | Environmental | Hydroxamate/catechol siderophores | 73 |
E. coli | ESA-C01 | E. coli EPI300 fosmid clone containing viuB-shiF and iucABCD-iutA from pESA3 | 43 | ||
E. coli | ESA-M04 | E. coli EPI300 fosmid clone lacking viuB-shiF and iucABCD-iutA | 43 |
Strain metadata for these and those screened by PCR can be found in PATRN (http://www.patrn.net). ID, identity; CSF, cerebrospinal fluid.