Table 3. Results of birth-death likelihood (BDL) analyses of lineage diversification.
Clade A | |||||||||||
Model | LH | r1 | r2 | r3 | a | xp | k | st1 | st2 | AIC | ΔAICrc |
Pb | 19.997 | 0.413 | −37.993 | 3.618 | |||||||
Bd | 20.199 | 0.320 | 0.357 | −36.397 | 5.214 | ||||||
DDX | 20.141 | 0.297 | −0.130 | −36.282 | 5.329 | ||||||
DDL | 19.997 | 0.413 | 516353.7 | −35.993 | 5.618 | ||||||
Yule2rate | 20.697 | 0.291 | 0.476 | 2.458 | −35.394 | 6.217 | |||||
Yule3rate | 25.806 | 0.363 | 19.017 | 0.404 | 1.687 | 1.680 | −41.611 | 0 |
Notes: Analyses were conducted using the ultrametric tree obtained in BEAST. All outgroups and intermittent taxa were pruned to obtain the ingroup clades A and B. Abbreviations: Pb – pure birth; Bd – birth-death; DDX – exponential density dependent; DDL – logistic density dependent; Yule2rate – Yule with 2 rates; Yule3rate – Yule with 3 rates; LH – log-likelihood; r1/r2/r3 – net diversification rates; a – extinction fraction; xp – rate change parameter DDX model; k – carrying capacity parameter DDL model; st1/st2 – timing of rate shift (mya); AIC – Akaike information criterion; ΔAICrc = difference between the best rate constant and rate variable models.