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. 2012 Aug 10;7(8):e42411. doi: 10.1371/journal.pone.0042411

Table 2. Soybean genes encoding putative CKX enzymes and their properties.

Gene name Chromosome locus Number of exonsa FAD_binding_4b CK-bindingb Familyc Length (aa) Identity (%)d Glycosylation sitese TargetPf
GmCKX01 Glyma19g31620 5 1.50E-22 2.20E-112 AtCKX1/AtCKX6 544 59.1/60.8 4 C/5
GmCKX02 Glyma03g28910 7 1.20E-21 2.70E-69 AtCKX1/AtCKX6 551 49.2/49.7 4 C/5
GmCKX03 Glyma09g07190 −6 1.10E-21 4.00E-93 AtCKX2 533 45 6 M/5
GmCKX04 Glyma09g07360 6 1.40E-18 1.30E-118 AtCKX3 536 54.8 2 S/5
GmCKX05 Glyma13g16420 7 1.80E-12 1.70E-102 AtCKX3 429 42.1 7 −/2
GmCKX06 Glyma13g16430 −5 1.10E-23 1.00E-114 AtCKX3 535 54.3 1 S/3
GmCKX07 Glyma15g18560 5 2.60E-20 5.90E-118 AtCKX3 543 53.9 2 S/5
GmCKX08 Glyma17g06220 5 4.30E-23 1.60E-116 AtCKX3 535 55.8 2 S/1
GmCKX09 Glyma17g06230 −6 1.60E-20 4.90E-102 AtCKX3/AtCKX4 528 46.8/46.8 6 −/5
GmCKX10 Glyma06g03180 5 1.40E-22 9.40E-120 AtCKX5 518 64 1 S/2
GmCKX11 Glyma04g03130 5 3.20E-22 3.30E-120 AtCKX5 458 60.8 1 −/4
GmCKX12 Glyma09g35950 6 1.50E-20 1.10E-113 AtCKX6 534 68.6 3 S/1
GmCKX13 Glyma11g20860 5 5.20E-21 2.80E-114 AtCKX6 552 64.4 6 M/4
GmCKX14 Glyma12g01390 −6 2.20E-21 6.90E-67 AtCKX6 442 55.5 1 −/4
GmCKX15 Glyma04g05840 6 3.40E-11 1.90E-101 AtCKX7 494 58.6 2 −/2
GmCKX16 Glyma14g11280 −4 7.40E-29 1.20E-103 AtCKX7 513 61.5 3 −/2
GmCKX17 Glyma17g34330 4 3.10E-26 5.90E-103 AtCKX7 513 58.6 2 −/2
a

Minus signs represent genes located on opposite strand

b

PFAM e-values for having the indicated protein domains

c

Closest homologs from Arabidopsis

d

Percentage of identical amino acids with the closest Arabidopsis homologs

e

Glycosylation sites were predicted with NetNGly (http://www.cbs.dtu.dk/services/NetNGlyc/); 1-5, highest to lowest possibility

f

Localization predicted with TargetP (http://www.cbs.dtu.dk/services/TargetP/); M, mitochondria; C, chloroplast; S, secretory pathways; “–”, not known location; 1-5, highest to lowest possibility