Table 2. Soybean genes encoding putative CKX enzymes and their properties.
Gene name | Chromosome locus | Number of exonsa | FAD_binding_4b | CK-bindingb | Familyc | Length (aa) | Identity (%)d | Glycosylation sitese | TargetPf |
GmCKX01 | Glyma19g31620 | 5 | 1.50E-22 | 2.20E-112 | AtCKX1/AtCKX6 | 544 | 59.1/60.8 | 4 | C/5 |
GmCKX02 | Glyma03g28910 | 7 | 1.20E-21 | 2.70E-69 | AtCKX1/AtCKX6 | 551 | 49.2/49.7 | 4 | C/5 |
GmCKX03 | Glyma09g07190 | −6 | 1.10E-21 | 4.00E-93 | AtCKX2 | 533 | 45 | 6 | M/5 |
GmCKX04 | Glyma09g07360 | 6 | 1.40E-18 | 1.30E-118 | AtCKX3 | 536 | 54.8 | 2 | S/5 |
GmCKX05 | Glyma13g16420 | 7 | 1.80E-12 | 1.70E-102 | AtCKX3 | 429 | 42.1 | 7 | −/2 |
GmCKX06 | Glyma13g16430 | −5 | 1.10E-23 | 1.00E-114 | AtCKX3 | 535 | 54.3 | 1 | S/3 |
GmCKX07 | Glyma15g18560 | 5 | 2.60E-20 | 5.90E-118 | AtCKX3 | 543 | 53.9 | 2 | S/5 |
GmCKX08 | Glyma17g06220 | 5 | 4.30E-23 | 1.60E-116 | AtCKX3 | 535 | 55.8 | 2 | S/1 |
GmCKX09 | Glyma17g06230 | −6 | 1.60E-20 | 4.90E-102 | AtCKX3/AtCKX4 | 528 | 46.8/46.8 | 6 | −/5 |
GmCKX10 | Glyma06g03180 | 5 | 1.40E-22 | 9.40E-120 | AtCKX5 | 518 | 64 | 1 | S/2 |
GmCKX11 | Glyma04g03130 | 5 | 3.20E-22 | 3.30E-120 | AtCKX5 | 458 | 60.8 | 1 | −/4 |
GmCKX12 | Glyma09g35950 | 6 | 1.50E-20 | 1.10E-113 | AtCKX6 | 534 | 68.6 | 3 | S/1 |
GmCKX13 | Glyma11g20860 | 5 | 5.20E-21 | 2.80E-114 | AtCKX6 | 552 | 64.4 | 6 | M/4 |
GmCKX14 | Glyma12g01390 | −6 | 2.20E-21 | 6.90E-67 | AtCKX6 | 442 | 55.5 | 1 | −/4 |
GmCKX15 | Glyma04g05840 | 6 | 3.40E-11 | 1.90E-101 | AtCKX7 | 494 | 58.6 | 2 | −/2 |
GmCKX16 | Glyma14g11280 | −4 | 7.40E-29 | 1.20E-103 | AtCKX7 | 513 | 61.5 | 3 | −/2 |
GmCKX17 | Glyma17g34330 | 4 | 3.10E-26 | 5.90E-103 | AtCKX7 | 513 | 58.6 | 2 | −/2 |
Minus signs represent genes located on opposite strand
PFAM e-values for having the indicated protein domains
Closest homologs from Arabidopsis
Percentage of identical amino acids with the closest Arabidopsis homologs
Glycosylation sites were predicted with NetNGly (http://www.cbs.dtu.dk/services/NetNGlyc/); 1-5, highest to lowest possibility
Localization predicted with TargetP (http://www.cbs.dtu.dk/services/TargetP/); M, mitochondria; C, chloroplast; S, secretory pathways; “–”, not known location; 1-5, highest to lowest possibility