Table 2. Characteristics of SNPs analysed in this study.
SNP | HWp-value | Minor allele frequency | Alleles | GenBankaccession series | Primers 5′ → 3′ |
rs174546 | 0.201 | 0.369 | C:T | JQ773028–JQ773088 | F: TCACCAACTACCTGCATGTGCCA |
R: TGCTGTCAGCCTTCGCCGACAT | |||||
rs174548 | 0.167 | 0.27 | C:G | JQ773089–JQ773142 | F: TACCTGGGTGGAAACCCAGTCCA |
R: TGAAGGGGACATGCAAGAAGGGC | |||||
rs174549 | 0.167 | 0.27 | G:A | JQ773089–JQ773142 | F: TACCTGGGTGGAAACCCAGTCCA |
R: TGAAGGGGACATGCAAGAAGGGC | |||||
rs174555 | 0.118 | 0.336 | T:C | JQ773200–JQ773260 | F: TGGGCAATGTCAGTGGTGGGGA |
R: ACAGATGAGTTCCGGGAGCTGC |
Minor allele frequencies were comparable to those specified in the CEU HapMap dataset and did not violate Hardy Weinberg equilibrium (HW p-value).