Table 1. Estimated kinetic parameters (mean ± standard deviation).
Extra nt in cleavage site loop | Helix la | kobs, s-1 | fmax | k1, s-1 | k-1, s-1 | |
---|---|---|---|---|---|---|
3′ permutations | ||||||
RS19 | CUAA | + | 3.0 ± 0.19 | 0.89 ± 0.023 | ≥2.7 ± 0.20 | ≤0.32 ± 0.065 |
RS19Δ5′ | CUAA | + | 4.2 ± 0.25 | 0.91 ± 0.015 | ≥3.8 ± 0.24 | ≤0.37 ± 0.060 |
RS19Δla | — | - | 0.33 ± 0.036 | 0.91 ± 0.011 | ≥0.31 ± 0.029 | ≤0.029 ± 0.0071 |
RS19Δ5′α | CUAA | + | 2.0 ± 0.22 | 0.77 ± 0.010 | ≥1.6 ± 0.20 | ≤0.45 ± 0.027 |
RS19β | CUAA | + | 1.7 ± 0.24 | 0.85 ± 0.029 | ≥1.5 ± 0.16 | ≤0.27 ± 0.082 |
RS19γ | CUAA | + | 1.8 ± 0.13 | 0.87 ± 0.015 | ≥1.6 ± 0.084 | ≤0.24 ± 0.044 |
RS19Δ5′γ | CUAA | + | 2.9 ± 0.25 | 0.87 ± 0.017 | ≥2.5 ± 0.27 | ≤0.38 ± 0.016 |
RS19ΔL | — | + | 1.9 ± 0.38 | 0.11 ± 0.0055 | 0.21 ± 0.031 | 1.7 ± 0.35 |
RS19ΔL (Ch) | — | + | 1.9 ± 0.42* | 0.12 ± 0.0049* | 0.22 ± 0.049 | 1.7 ± 0.37 |
RS19L5 | CUAAA | + | 3.7 | 0.88 | ≥3.3 | ≤0.41 |
RS19L4a | CAAA | + | 2.1 | 0.86 | ≥1.8 | ≤0.28 |
RS19L4b | AUAA | + | 2.4 | 0.86 | ≥2.1 | ≤0.33 |
RS19L4c | AAAA | + | 2.8 | 0.90 | ≥2.5 | ≤0.26 |
RS19L3 | AAA | + | 1.0 | 0.88 | ≥0.93 | ≤0.12 |
RS19L2 | AA | + | 0.63 | 0.82 | ≥0.51 | ≤0.11 |
RS19L1 | A | + | 10 ± 1.6 | 0.26 ± 0.012 | 2.6 ± 0.46 | 7.4 ± 1.2 |
RS19L1 (Ch) | A | + | 6.2 ± 1.4* | 0.32 ± 0.03* | 2.0 ± 0.51 | 4.2 ± 0.95 |
5′ permutations | ||||||
G11 | — | + | 0.0021 ± 0.00031 | 0.91 ± 0.0030 | n/a | n/a |
G11L | CUAA | + | 0.14 ± 0.0045 | 0.94 ± 0.046 | n/a | n/a |
AN16 | — | + | 0.11 ± 0.010 | 0.93 ± 0.012 | n/a | n/a |
AN16Δla | — | - | 0.31 ± 0.016 | 0.91 ± 0.038 | n/a | n/a |
AN16εL | CUAA | + | 2.2 ± 0.18 | 0.86 ± 0.014 | ≥1.9 ± 0.13 | ≤0.33 ± 0.050 |
AN16ε | — | + | 1.9 ± 0.21 | 0.15 ± 0.0045 | ≥0.24 ± 0.047 | ≤1.6 ± 0.17 |
n/a, Not available.
Calculated first-order parameters of burst phase; fmax = k1/(k1 + k-1); kobs = k1 + k-1