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. 2004 Jan 30;101(6):1467–1472. doi: 10.1073/pnas.0305753101

Table 1. Estimated kinetic parameters (mean ± standard deviation).

Extra nt in cleavage site loop Helix la kobs, s-1 fmax k1, s-1 k-1, s-1
3′ permutations
   RS19 CUAA + 3.0 ± 0.19 0.89 ± 0.023 ≥2.7 ± 0.20 ≤0.32 ± 0.065
   RS19Δ5′ CUAA + 4.2 ± 0.25 0.91 ± 0.015 ≥3.8 ± 0.24 ≤0.37 ± 0.060
   RS19Δla - 0.33 ± 0.036 0.91 ± 0.011 ≥0.31 ± 0.029 ≤0.029 ± 0.0071
   RS19Δ5′α CUAA + 2.0 ± 0.22 0.77 ± 0.010 ≥1.6 ± 0.20 ≤0.45 ± 0.027
   RS19β CUAA + 1.7 ± 0.24 0.85 ± 0.029 ≥1.5 ± 0.16 ≤0.27 ± 0.082
   RS19γ CUAA + 1.8 ± 0.13 0.87 ± 0.015 ≥1.6 ± 0.084 ≤0.24 ± 0.044
   RS19Δ5′γ CUAA + 2.9 ± 0.25 0.87 ± 0.017 ≥2.5 ± 0.27 ≤0.38 ± 0.016
   RS19ΔL + 1.9 ± 0.38 0.11 ± 0.0055 0.21 ± 0.031 1.7 ± 0.35
   RS19ΔL (Ch) + 1.9 ± 0.42* 0.12 ± 0.0049* 0.22 ± 0.049 1.7 ± 0.37
   RS19L5 CUAAA + 3.7 0.88 ≥3.3 ≤0.41
   RS19L4a CAAA + 2.1 0.86 ≥1.8 ≤0.28
   RS19L4b AUAA + 2.4 0.86 ≥2.1 ≤0.33
   RS19L4c AAAA + 2.8 0.90 ≥2.5 ≤0.26
   RS19L3 AAA + 1.0 0.88 ≥0.93 ≤0.12
   RS19L2 AA + 0.63 0.82 ≥0.51 ≤0.11
   RS19L1 A + 10 ± 1.6 0.26 ± 0.012 2.6 ± 0.46 7.4 ± 1.2
   RS19L1 (Ch) A + 6.2 ± 1.4* 0.32 ± 0.03* 2.0 ± 0.51 4.2 ± 0.95
5′ permutations
   G11 + 0.0021 ± 0.00031 0.91 ± 0.0030 n/a n/a
   G11L CUAA + 0.14 ± 0.0045 0.94 ± 0.046 n/a n/a
   AN16 + 0.11 ± 0.010 0.93 ± 0.012 n/a n/a
   AN16Δla - 0.31 ± 0.016 0.91 ± 0.038 n/a n/a
   AN16εL CUAA + 2.2 ± 0.18 0.86 ± 0.014 ≥1.9 ± 0.13 ≤0.33 ± 0.050
   AN16ε + 1.9 ± 0.21 0.15 ± 0.0045 ≥0.24 ± 0.047 ≤1.6 ± 0.17

n/a, Not available.

*

Calculated first-order parameters of burst phase; fmax = k1/(k1 + k-1); kobs = k1 + k-1