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. Author manuscript; available in PMC: 2012 Aug 13.
Published in final edited form as: IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):524–536. doi: 10.1109/TCBB.2008.101

TABLE I.

Dataset of 23 β-barrel membrane proteins used for this study.

Protein Organism Architecture Strands PDB ID
OmpA E. coli monomer 8 1BXW [15]
OmpX E. coli monomer 8 1QJ8 [16]
NspA N. meningitidis monomer 8 1P4T [17]
OmpW E. coli monomer 8 2F1T [18]
PagP E. coli monomer 8 1THQ [19]
OpcA N. meningitidis monomer 10 1K24 [20]
OmpT E. coli monomer 10 1I78 [21]
OMPLA E. coli dimer 12 1QD6 [22]
NalP N. meningitidis monomer 12 1UYN [23]
FadL E. coli monomer 14 1T16 [24]
Porin R. capsulatus trimer 16 2POR [25]
Porin R. blastica trimer 16 1PRN [26]
OmpF E. coli trimer 16 2OMF [27]
Omp32 C. acidovorans trimer 16 1E54 [28]
LamB S. typhimurium trimer 18 2MPR [29]
ScrY S. typhimurium trimer 18 1A0S [30]
FepA E. coli monomer 22 1FEP [31]
FhuA E. coli monomer 22 2FCP [32]
FecA E. coli monomer 22 1KMO [33]
BtuB E. coli monomer 22 1NQE [34]
FptA P. aeruginosa monomer 22 1XKW [35]
TolC E. coli trimer 4 1EK9 [36]
α-Hemolysin S. aureus heptamer 2 7AHL [37]