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. Author manuscript; available in PMC: 2013 Aug 1.
Published in final edited form as: Mol Microbiol. 2012 Jul 12;85(4):795–814. doi: 10.1111/j.1365-2958.2012.08142.x

Table 2.

PCR primers used in the study

Name Sequence (5’ → 3’)
TF1 TCAACTCGTCGTCCAGCTCTTCTCC
TF2 AGTGAATGAATTTGCTGACAGCCGACG
TF3 GTGACTGAGACGGTGCAGCATC
TF4 TTCCGTGGTAATGTTGAGTAGACGC
Afp1 CGTCGGCTGTCAGCAAATTCATTCACTGCCTCAAACAATGCTCTTCACCC
Afp2 GATGCTGCACCGTCTCAGTCACCTGTCTGAGAGGAGGCACTGATGC
RM3-f1 CACTACATGAACGTGTTGGTGGCG
RM3-r2 TCACGTACTTTGTCGCCTTAGGGC
TF5 AAGGTTGGCGAGGCTTCAGAGG
TF6 TCTCCCAACTTCATCGTCATCACCG
pyrGAngsp1 CAGCCATCCCACTTCCAGCTTC
pyrGAngsp2 CTGGTAATACTATGCTGGCTGC
RtfAcom1 AAAAAACCGCGGTCGCAAGCATATCCTTCAACTCG
RtfAcom2 AAAAAAGGTACCTTAGGCAGTGGGTATGATGTTGG
Rtf-OE1 AAAAAAGGTACCATGGCCGATGATCTCGACG
RtfA-OE2 AAAAAATTAATTAA CAAGTTCTAAATTTCAATATCGATGTCC
FusionMarkerLinkerR GTCTGAGAGGAGGCACTGATGCG
RM33UTRFusionF CTTGAATATATTCGGTAAAAGATGCTTTTATTCTGC
RM33UtrFusionR GCCTTCTTCTCCGCTTCAGCC
RM35UTRFusionR AGCATACAAGAGACAGCGAGAGC
RM3GFPFusionF CCTGGATCTGGACATCGATATTGAAATTGGAGCTGGTGCAGGCGCTGGAGCC
RM3GFPFusionR GCAGAATAAAAGCATCTTTTACCGAATATATTCAAGGTCTGAGAGGAGGCACTGATGCG
actin-F ATGGAAGAGGAAGTTGCTGCTCTCGTTATCGACAATGGTTC
actin-R CAATGGAGGGGAAGACGGCACGGG
nsdD-F CATCTCACCAGCCACAATTACAGGCGGAACCATCAC
nsdD-R TTGCGAGCCAGACACAGAGGTCATAACAGTGCTTGC
steA-F TCCAGCAAATGGAACCGTGGAATCAGGTGCTC
steA-R GAAGGGATGGGGCAAGAATGAGACTTCTGCGGGTAA
brlA-F AGCTGCCTGGTGACGGTAGTTGTTGTTGGTGTTGC
brlA-R CAGGAACGAATGCCTATGCCCGACTTTCTCTCTGGA
S1-822 TGACCACGAGCACCCCCATC
S2-823 ACGCATGGTGGCAGGCTTTG
S3-824 TCTGCCGGCGTTTATTTGTCA
S4-825 TCGAGAGGCTGAAGCAGAAGACA
S5-826 CAAAGCCTGCCACCATGCGTGGAGCTGGTGCAGGCGCTGGAG
S6-827 TGACAAATAAACGCCGGCAGACTGTCTGAGAGGAGGCACTGAT
hhoAF GCCTCCCAAGAAAGCTCCCACTACGGCC
hhoAR GGCCTTCTTGTTCTTAGCAGTCTTCTTGGTCGCC
hhoA_mRFP_F GGCGACCAAGAAGACTGCTAAGAACAAGAAGGCCGGAGCTGGTGCAGGCGCTGGAGCC
hhoA_mRFP_R CGCTCAAACAATCTCCAAGCCAGGCTGCCTGTTTAGGCGCCGGTGGAGTGGCGGCCC
ANhhoA_3UTR_F ACAGGCAGCCTGGCTTGGAGATTGTTTGAGCG
ANhhoA_3UTR_R AAAAAAGGTACCGGGGGAACAACGGAGCCGGTCCAGTGG
rtfADHfor AAAAAAAGATCTGTATGGCCGATGATCTCGAC
rtfADHrev AAAAAAAGATCTCTAAATTTCAATATCGATGTCCA