Table 3.
Example of allele counts per SNP haplotype for BM1824 that fits the haplotype identification criteria.
| Haplotypea | Brown Swiss |
Guernsey |
Holstein |
Jersey |
||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 178b | 180 | 182 | 188 | 190 | 178 | 180 | 182 | 188 | 190 | 178 | 180 | 182 | 188 | 190 | 178 | 180 | 182 | 188 | 190 | |
| BABBAABBAAAABBBAABABABBBABBBAAAB | 26 | 5 | 32 | 1 | ||||||||||||||||
| BAABAABBAAAABBBAABABABBBABBBAAAB | 32 | |||||||||||||||||||
| BBBBAABBAAAABBBAABABABBBABBBAAAB | 21 | |||||||||||||||||||
| BABBAABBAAAABBBAABABABBBAABBBBAB | 4 | |||||||||||||||||||
| BABBAABBAAAABBBAABABABBBABBBAABA | 3 | |||||||||||||||||||
| BAABBAABBAAABBBAABABABABABBBAAAB | 2 | |||||||||||||||||||
| BAABABABBAAABBAABAABABBBABAAAABA | 65 | 1 | ||||||||||||||||||
| BAABABABBAAABBAABAABABBBABBBAAAB | 50 | |||||||||||||||||||
| AABBAABBBAAABBAABAABABBBABBBAAAB | 58 | 2 | ||||||||||||||||||
| AAAABAAABBABBAAABAABABABABAAAAAB | 3 | 14 | ||||||||||||||||||
| AAAABAAABBABBAAABAABABABABAAAABA | 8 | 8 | 69 | 1 | 3 | |||||||||||||||
| AAAABAAABBABBAAABAABABABABAAAAAA | 14 | |||||||||||||||||||
| BAABBAABBBABBBAABBABABABABABAAAA | 1 | |||||||||||||||||||
| AAAABAAABBABBAAABAABABABABABAAAA | 3 | |||||||||||||||||||
| BABBAABBAABAABBBBBBABAAABABBBBAB | 1 | |||||||||||||||||||
| BAAABABBAABAABBBBBBABAAABABBBBAB | 113 | |||||||||||||||||||
| BAABAABBAABAABBBBBBABAAABABBBBAB | 1 | 71 | ||||||||||||||||||
| AABBAABBAABAABBBBBBABAAABABBBBAB | 3 | 4 | ||||||||||||||||||
| AAAABABBAABAABBBBBBABAAABABBBBAB | 19 | 1 | 8 | 9 | 3 | 11 | ||||||||||||||
aHaplotypes SNP listed in Table S2 in Supplementary Material.
bBM1824 alleles.