Table 3.
LD over varied distances.
| Distance range (kb) | Number of SNP pair | Average r2 (SD)§ | SNP pair with r2 > 0.3 (%)§ | Significant effect of breed group | |
|---|---|---|---|---|---|
| 0–30 | AN | 6608 | 0.29 (0.30) | 2288 (34.62) | *** |
| CH | 6970 | 0.22 (0.25) | 1815 (26.04) | ||
| C | 7498 | 0.21 (0.24) | 1940 (25.87) | ||
| 30–70 | AN | 17,388 | 0.23 (0.26) | 4831 (27.78) | *** |
| CH | 18,342 | 0.16 (0.21) | 3269 (17.82) | ||
| C | 19,786 | 0.15 (0.20) | 3307 (16.71) | ||
| 70–100 | AN | 12,832 | 0.19 (0.23) | 2720 (21.20) | *** |
| CH | 13,651 | 0.12 (0.17) | 1519 (11.13) | ||
| C | 14,680 | 0.11 (0.16) | 1448 (9.86) | ||
| 100–200 | AN | 41,599 | 0.14 (0.19) | 6240 (15.00) | *** |
| CH | 44,271 | 0.08 (0.12) | 2446 (5.53) | ||
| C | 47,507 | 0.07 (0.11) | 2098 (4.42) | ||
| 200–1000 | AN | 322,517 | 0.09 (0.12) | 21981 (6.82) | *** |
| CH | 343,293 | 0.04 (0.07) | 3778 (1.10) | ||
| C | 369,198 | 0.03 (0.05) | 1870 (0.51) | ||
§
Pairwise LD;
***
p < 0.001.