Table 4.
LD observed in Angus on BTA5, 13, and 29.
| Distance (kb) | BTA | Number of SNP pairs | Average r2 (SD) | SNP pair with r2 > 0.3 (%) | Compared to the overall mean r2 |
|---|---|---|---|---|---|
| 0–30 | overall | 228 | 0.29 (0.30) | 79 (34.73) | – |
| 5 | 213 | 0.32 (0.32) | 81 (38.03) | NS | |
| 13 | 206 | 0.34 (0.32) | 87 (42.23) | * | |
| 29 | 143 | 0.24 (0.23) | 46 (32.17) | NS | |
| 30–70 | overall | 600 | 0.23 (0.26) | 167 (27.84) | – |
| 5 | 613 | 0.26 (0.30) | 192 (31.32) | * | |
| 13 | 572 | 0.26 (0.28) | 186 (32.52) | * | |
| 29 | 399 | 0.19 (0.23) | 81 (13.21) | NS | |
| 70–100 | overall | 442 | 0.19 (0.23) | 94 (21.31) | – |
| 5 | 479 | 0.20 (0.24) | 117 (19.09) | NS | |
| 13 | 435 | 0.22 (0.26) | 118 (27.13) | ** | |
| 29 | 280 | 0.14 (0.17) | 39 (6.36) | NS | |
| 100–200 | overall | 1434 | 0.14 (0.19) | 216 (15.06) | – |
| 5 | 1420 | 0.18 (0.21) | 310 (50.57) | *** | |
| 13 | 1405 | 0.17 (0.20) | 294 (20.93) | *** | |
| 29 | 898 | 0.10 (0.14) | 82 (13.38) | NS | |
| 200–1000 | overall | 11,121 | 0.09 (0.12) | 763 (6.86) | – |
| 5 | 11,458 | 0.12 (0.15) | 1286 (11.22) | *** | |
| 13 | 10,759 | 0.11 (0.14) | 1006 (9.35) | *** | |
| 29 | 7082 | 0.07 (0.09) | 230 (3.25) | NS |
*
p < 0.05
**
p < 0.01
***
p < 0.0001
NS, not significant.