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. 2012 Aug 14;18(30):3977–3991. doi: 10.3748/wjg.v18.i30.3977

Table 1.

Sequences of oligonucleotide primers and conditions for real-time polymerase chain reaction

Gene target Genbank number (mRNA) Oligonucleotide1 (5'- to 3'-) Annealing temperature (°C) Product size (bp)
Occludin NM-031329 F: GCTCAGGGAATATCCACCTATC R: TTCTCCAGCAACCAGCATC 60 344
ZO-1 NM-001106266 F: CCACAGACATCCAACCAGC R: AGCCCAAAGAACAGAAGACC 60 247
Claudin-1 NM-031699 F: GCCTCCAATGCCGTTCT R: TGCCTGCGTCCCTCTTG 60 317
Claudin-4 NM-001012022 F: GTTCCCGCCAGCAACTATG R: CCTTCAGCCCCGTATCCA 60 282
JAM-A NM-053796 F: CCTCCATCCAAGCCGACA R: CAAAGACCAAATCCCCTGAC 60 211
prkC NM-001105713 F: GATGGACGGGGTCACGA R: CGCTTGGCAGGGTGTTT 60 165
β-actin NM-031144 F: CAGGTCATCACTATCGGCAAT R: GAGGTCTTTACGGATGTCAAC 60 144
1

Primers were designed based on sequences of rat-corresponding genes from the GenBank database. JAM-A: Junction adhesion molecule-A; ZO-1: Zonula occludens-1.

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