Table 3.
Results from use of the subtyping protocol developed in this study on the German HUSEC collection compared to the results obtained by classical typing as described in references 16, 17, and 66
| HUSEC no. | Strain no. | Serotype | stx classical typing as described in references 16, 17, and 66 | Subtyping protocol (this study) |
|---|---|---|---|---|
| HUSEC001 | 05-946 | O111:H10 | 2 | stx2a |
| HUSEC002 | 5152/97 | Ont:H- | 2 | stx2a |
| HUSEC003 | 6334/96 | O157:H7 | 2 | stx2a |
| HUSEC004 | 3072/96 | O157:H- | 2 | stx2a |
| HUSEC005 | 2907/97 | O55:H7 | 2 | stx2a |
| HUSEC006 | 5376/99 | O157:H- | 2 | stx2a |
| HUSEC007 | 7382/96 | O103:H2 | 2 | stx2a |
| HUSEC008 | 2791/97 | O103:H- | 2 | stx2a |
| HUSEC009 | 6833/96 | OR:H2 | 2 | stx2a |
| HUSEC010 | 1805/00 | O119:H2 | 1 | stx1a |
| HUSEC011 | 2516/00 | O111:H8 | 1 and 2 | stx1a and stx2a |
| HUSEC012 | 6037/96 | O111:H- | 1 and 2 | stx1a and stx2a |
| HUSEC013 | 2245/98 | O26:H11 | 1 | stx1a |
| HUSEC014 | 5080/97 | O26:H- | 1 and 2 | stx1a and stx2a |
| HUSEC015 | 126814/98 | OR:H11 | 1 and 2 | stx2a (stx1 losta) |
| HUSEC016 | 5028/97 | Ont:Hnt | 1 | stx1a |
| HUSEC017 | 3319/99 | O26:H11 | 1 and 2 | stx1a and stx2a |
| HUSEC018 | 1530/99 | O26:H11 | 2 | stx2a |
| HUSEC019 | 1588/98 | OR:H11 | 1 | stx1a |
| HUSEC020 | 3271/00 | O26:H11 | 2 | stx2a |
| HUSEC021 | 0488/99/A | O145:H28 | 2 | stx2a |
| HUSEC022 | 4557/99 | O145:H- | 2 | stx2a |
| HUSEC023 | 1169/97/1 | O112:H- | 2dact | stx2d |
| HUSEC024 | 2996/96 | O73:H18 | 2dact | stx2d |
| HUSEC025 | 06-05009 | O55:Hnt | 1 | stx1a |
| HUSEC026 | 99-09355 | O113:H21 | 2dact | stx2d |
| HUSEC027 | 03-07727 | O163:H19 | 2dact | stx2d |
| HUSEC028 | 03-06687 | O128:H2 | 1c and 2d | stx1c and stx2b |
| HUSEC029 | 4256/99 | O70:H8 | 2 | stx2a |
| HUSEC030 | 05-03519 | O98:H- | 1 | stx1a |
| HUSEC031 | 7792/96 | OR:H- | 1 | stx1a |
| HUSEC032 | 2441/98 | O136:Hnt | 1c and 2 | stx1c and stx2a |
| HUSEC033 | 4392/97 | O145:H25 | 2 | stx2a |
| HUSEC034 | 3332/99 | O91:H21 | 1 and 2 and 2dact | stx1a and stx2a and stx2d |
| HUSEC035 | 1529/98 | O121:H19 | 2 | stx2a |
| HUSEC036 | 2839/98 | O145:H- | 1 and 2c | stx2c (stx1 losta) |
| HUSEC037 | 02-03885 | O104:H21 | 1 and 2 and 2dact | stx1a and stx2a and stx2d |
| HUSEC038 | 3356/97B | Ont:H21 | 1 and 2dact | stx1a and stx2d |
| HUSEC039 | 3651/96 | O76:H19 | 1c | stx1c |
| HUSEC040 | 220/00 | O174:H21 | 2c | stx2c |
| HUSEC041 | 01-09591 | O104:H4 | 2 | stx2a |
| HUSEC042 | 820/08 | O165:H25 | 2 and 2c | stx2a and stx2c |
a
Loss of stx1 was confirmed using classical typing as described in reference 66.