Table 5. QTLs detected in the mapping population.

Trait code	Montanaso Lombardo (ML)										Monsampolo del Tronto (MT)
	GW	QTL	Chrom	Position (cM)	Locus	LOD	CI	PVE	A	D	GW	QTL	Chrom	Position (cM)	Locus	LOD	CI	PVE	A	D
Adlan	3.9										3.9	adlanE05.MT	5	57.383	29014_PstI_L313	5.94	55.5–59.4	4.2	−0.182	0.281
		adlanE06.ML	6	151.48	36272_PstI_L411	7.93	142−152	8.00	−0.282	0.287		adlanE06.MT	6	152.125	30320_PstI_L251	5.66	151–152	4	−0.226	−0.011
												adlanE08.MT	8	1.144	27692_PstI_L417	5.44	0.5–2	3.8	−0.176	0.246
		adlanE10.ML	10	69.39	15158_PstI_L379	36.98	69.1–69.9	60.60	−0.948	0.060		adlanE10.MT	10	69.39	15158_PstI_L379	44.96	69.1–69.9	60.9	−0.865	−0.049
Stean	3.9										3.9	steanE02.MT	2	71.05	29527_PstI_L459	4.92	68.7–73	4.40	0.151	−0.015
		steanE05.ML	5	69.73	30269_PstI_L397	14.59	68–75	14.80	−0.251	0.234		steanE05.MT	5	69.73	30269_PstI_L397	14.95	67–74	15.70	−0.272	0.200
		steanE10.ML	10	68.92	1891_PstI_L363	36.60	68.1–69	53.60	−0.487	0.252		steanE10.MT	10	68.92	1891_PstI_L363	32.50	68.1–69	45.60	−0.447	0.259
Ablan	3.8	ablanE06.ML	6	151.482	36272_PstI_L411	8.21	142–152	8.70	−0.209	0.259	3.8
												ablanE08.MT	8	1.14	27692_PstI_L417	4.26	0–1.5	6.30	−0.216	0.097
		ablanE10a.ML	10	68.92	15158_PstI_L379	29.89	69.1–69.9	45.20	−0.642	−0.004		ablanE10.MT	10	68.58	11760_PstI_L333	23.1	67.5–69.3	46.0	−0.552	0.071
		ablanE10b.ML	10	0	CT167	6.59	0–5	6.80	−0.255	−0.101
		ablanE11.ML	11	83.275	TG370	4.51	71–83	4.50	−0.177	0.227
Calan	3.8	calanE05.ML	5	75.30	3311_PstI_L361	12.39	70–80	8.80	−0.213	0.147	3.8	calanE05.MT	5	59.81	5093_PstI_L276	5.32	58–63	3.4	−0.174	0.095
		calanE06.ML	6	151.48	36272_PstI_L411	4.48	138–151.7	2.70	−0.094	0.117		calanE06.MT	6	152.13	30320_PstI_L251	4.15	151–152	2.6	−0.131	0.097
		calanE08.ML	8	27.53	CSM4	5.11	25–28	3.40	−0.112	0.130
		calanE10.ML	10	68.92	1891_PstI_L363	47.53	68–69	61.00	−0.553	0.290		calanE10.MT	10	68.92	1891_PstI_L363	52.25	68–69	74.1	−0.736	0.430
Corcol	4.5	corcolE05.ML	5	75.30	3311_PstI_L361	34.08	70–83	63.70	−1.545	1.490	4.0	corcolE05.MT	5	75.30	3311_PstI_L361	32.67	70–78	57.30	−1.539	1.227
												corcolE10.MT	10	69.13	35442_PstI_L404	4.08	68–69	4.50	−0.424	0.253
Lvean	3.7	lveanE05.ML	5	75.30	3311_PstI_L361	13.71	71–82	7.80	−0.274	0.189	3.9	lveanE05.MT	5	75.30	3311_PstI_L361	10.01	69–81	5.10	−0.226	0.162
		lveanE10.ML	10	69.13	35442_PstI_L404	58.94	68.6–69.1	73.90	−0.833	0.398		lveanE10.MT	10	68.92	1891_PstI_L363	61.80	68.5–69	77.20	−0.869	0.445
Pedan	4.2	pedanE01.ML	1	118.30	10041_PstI_L364	4.69	117–121	1.50	0.067	−0.191	3.8
		pedanE05.ML	5	59.81	5093_PstI_L276	5.95	57–62	1.90	−0.110	0.227		pedanE05.MT	5	75.30	3311_PstI_L361	5.57	69.7–83	4.00	−0.221	0.222
		pedanE10a.ML	10	69.13	35442_PstI_L404	73.20	69.1–69.2	76.40	−1.029	0.551		pedanE10.MT	10	69.13	35442_PstI_L404	48.32	68.9–69.1	70.70	−0.998	0.404
		pedanE10b.ML	10	0.00	CT167	6.33	0–4	2.00	−0.191	−0.039
		pedanE12a.ML	12	106.73	14133_PstI_L316	7.12	95–111	2.30	−0.190	0.020
		pedanE12b.ML	12	30.23	C2_At1g19130	5.73	28–35	1.80	0.181	0.032

For each trait the genome-wide LOD thresholds (GW) at p = 0.05 (as determined from 1,000 permutations) is indicated. The closest mapping marker to each QTL and which parent contributed positively to the trait are indicated, along with the LOD value of the QTL, the confidence interval (CI), the percentage of variation explained (PVE) and the additive (A)/dominance (D) contribution.