|
Ribosomal protein
|
| 6 |
30S ribosomal protein S8 |
P. luminescens TT01 |
rpsH
|
Binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit |
9.35 |
14205.6 |
1 |
0.7 |
0.8 |
0.27 |
1.03 |
| 15 |
50S ribosomal protein L17, plu4701 |
P. luminescens TT01 |
rplQ
|
A component of the macrolide binding site in the peptidyl transferase cente |
11.04 |
14708.8 |
1 |
0.5 |
1.27 |
0.69 |
1.34 |
| 26 |
50S ribosomal protein L3, plu4726 |
P. luminescens TT01 |
rplC
|
Binds directly near the 3′ end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin |
9.87 |
22328.9 |
1 |
0 |
0.41 |
0 |
0 |
| 44 |
50S ribosomal protein L9 plu4570 |
P. luminescens TT01 |
rplI
|
In E. coli this protein is wrapped around the base of the L1 stalk |
6.13 |
15872.5 |
1 |
2.38 |
2.23 |
0.92 |
1.37 |
| 45 |
50S ribosomal protein, L9 plu4570 |
P. luminescens TT01 |
rplI
|
In E. coli this protein is wrapped around the base of the L1 stalk |
6.13 |
15872.5 |
1 |
1.82 |
3.29 |
0.51 |
1.23 |
|
Adaptations conditions
|
| 7 |
Hypothetical protein, plu2032 |
P. luminescens TT01 |
|
Similar to Unknown protein YbdQ of E. coli; Similar to universal stress protein (pfam00582: Usp) |
6.19 |
15907.4 |
1 |
3.79 |
2.9 |
1.46 |
4.83 |
| 9 |
Hypothetical protein, plu2030 |
P. luminescens TT01 |
|
Similar to Unknown protein YbdQ of E. coli, Similar to universal stress protein (pfam00582: Usp) |
5.76 |
15283.2 |
1 |
1.71 |
1.21 |
0.2 |
0.45 |
| 48 |
Alkyl hydroperoxide reductase, small subunit (antioxidant), plu3907 |
P. luminescens TT01 |
ahpC
|
Alkyl hydroperoxide reductase, small subunit (antioxidant) |
5.98 |
22259.3 |
1 |
0.8 |
0.82 |
0.9 |
0.47 |
|
Secondary metabolites
|
| 12 |
Crystalline inclusion protein CipB |
P. luminescens TT01 |
cipB
|
Unknown, similar to crystalline inclusion protein type II |
6.08 |
11281.6 |
1 |
0.12 |
0 |
0.51 |
0 |
| 25 |
Crystalline inclusion protein CipA, plu1576 |
P. luminescens TT01 |
cipA
|
Crystalline inclusion protein CipA |
6.06 |
11710.9 |
1 |
0 |
0.08 |
0.74 |
0 |
| 32 |
Unknown |
P. luminescen
|
|
Similar to hemolysin from Fusobacterium nucleatum clinical isolate found in GenBank, Accession Number AF525507
|
5.61 |
39995.2 |
1 |
0.9 |
1.7 |
0.44 |
0.8 |
| 62 |
Hypothetical protein, plu4211 |
P. luminescens TT01 |
|
Highly similar to Hcp protein |
6.29 |
18482.5 |
1 |
11.43 |
14.91 |
19.98 |
3.24 |
|
Metabolism of amino acids and related molecules
|
| 30 |
Ethanolamine ammonia-lyase small subunit, plu2971 |
P. luminescens TT01 |
eutC
|
Catalyzes the formation of acetaldehyde from ethanolamine |
6.37 |
31188.4 |
1 |
4.17 |
0.5 |
1.1 |
1.2 |
| 36 |
Tryptophan synthase subunit beta, plu2466 |
P. luminescens TT01 |
trpB
|
Catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate |
6.2 |
43098 |
1 |
1.22 |
0.25 |
0.41 |
0.58 |
| 46 |
Serine/arginine repetitive matrix protein 2 |
|
Srrm2
|
|
12.02 |
294500.8 |
1 |
0.72 |
1.7 |
0.89 |
0.9 |
| 50 |
2,3-dihydroxy-2,3-dihy drophenylpropionate dehydrogenase, plu2207 |
P. luminescens TT01 |
hcaB
|
Converts cis-3-(3-carboxyethyl) -3,5-cyclohexadiene-1,2-diol (PP-dihydrodiol) into 3-(2,3-dihydroxylphenyl) propionate |
5.43 |
29519.1 |
1 |
0.37 |
0.3 |
0.49 |
0.9 |
| 51 |
Hypothetical protein, plu4676 |
P. luminescens TT01 |
|
Similar to 3-oxoacyl-[acyl-carrier-protein] synthase II (beta-ketoacyl-ACP synthase II) (KAS II) |
5.58 |
45407.3 |
1 |
3.29 |
3.0 |
0.01 |
<0.01 |
| 52 |
Serine hydroxymethyltransferase, plu3291 |
P. luminescens TT01 |
glyA
|
Catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate” |
5.92 |
45229.8 |
1 |
3.74 |
4.55 |
2.93 |
5.6 |
| 53 |
Urease accessory protein, plu2176 |
P. luminescens TT01 |
ureG
|
Urease accessory protein |
5.04 |
22868.1 |
1 |
4.42 |
2.98 |
5.17 |
6.66 |
| 54 |
Hypothetical protein, plu2040 |
P. luminescens TT01 |
|
Similar to vibrio bactin utilization protein ViuB |
5.51 |
31363 |
1 |
2.36 |
3.61 |
1.83 |
6.57 |
| 55 |
3-oxoacyl-(acyl carrier protein) synthase III, plu2835 |
P. luminescens TT01 |
fabH
|
FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs” |
5.33 |
34189.6 |
1 |
5.12 |
6.14 |
3.85 |
6.77 |
|
Nucleosides and nucleotides biosynthesis and metabolism
|
| 1 |
Hypothetical protein, plu3994 |
P. luminescens TT01 |
|
Similar to putative membrane protein YqjD (carboxyl transferase) of E. coli
|
7.93 |
11042 |
1 |
4.03 |
0.57 |
2.91 |
1.2 |
| 3 |
IS630 family transposase, plu0720 |
P. luminescens TT01 |
ISPlu3Y
|
Transposase, IS630 family |
9.35 |
39771.5 |
1 |
0.38 |
0.17 |
0.02 |
0.11 |
| 47 |
IS630 family transposase, plu0468 |
P. luminescens TT01 |
ISPlu10J
|
Transposase |
9.59 |
39687.9 |
1 |
0.85 |
0.6 |
0.71 |
0.25 |
| 4 |
ATP-dependent RNA helicase RhlE, plu1511 |
P. luminescens TT01 |
rhlE
|
This helicase is not essential cell growth |
10.01 |
48258.8 |
1 |
0.05 |
0.52 |
0.04 |
0.02 |
| 19 |
ATP-dependent RNA helicase RhlE, plu1511 |
P. luminescens TT01 |
rhlE
|
This helicase is not essential cell growth |
10.01 |
48258.8 |
1 |
0 |
1.43 |
0.2 |
0 |
| 18 |
Nucleoside diphosphate kinase, plu1372 |
P. luminescens TT01 |
ndk
|
Catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate |
5.35 |
15591.8 |
1 |
1.43 |
1.96 |
2.48 |
2.53 |
| 57 |
Uracil phosphoribosyl transferase, plu2759 |
P. luminescens TT01 |
upp
|
Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate |
5.46 |
22489 |
1 |
1.59 |
2.81 |
1.83 |
4.95 |
| 58 |
Reverse gyrase |
Leptospirillum sp. Group II UBA |
|
|
9.31 |
56458 |
1 |
0 |
4.93 |
6.32 |
0.41 |
|
Cell wall/membrane biogenesis
|
| 8 |
Karst CG12008-PA, isoform A |
Drosophila melanogaster
|
kst
|
Kst-PA; spectrin beta-heavy chain; beta-H spectrin; |
5.93 |
471351.1 |
1 |
2.20 |
1.8 |
1.33 |
1.16 |
| 43 |
hypothetical protein, plu3994 |
P. luminescens TT01 |
|
Similar to putative membrane protein YqjD of E. coli
|
7.93 |
11042 |
1 |
0.21 |
0.05 |
0.1 |
0.08 |
| 5 |
Periplasmic chaperone, plu0681 |
P. luminescens TT01 |
hlpA
|
Histone-like protein HLP-1 precursor |
9.43 |
18476.8 |
1 |
2.63 |
0.81 |
2.11 |
2.64 |
|
Transport and binding proteins
|
| 10 |
Unknown |
P. luminescens W14 |
|
From (type III secretion system, partial sequence) GI:27550090 |
6.1 |
16883.6 |
1 |
0 |
1.53 |
0 |
0 |
| 64 |
Unknown |
P. luminescens w14 |
|
From (type III secretion system, partial sequence) GI:27550090 |
6.1 |
16883.6 |
1 |
0.1 |
0.91 |
0.11 |
0.15 |
| 65 |
Unknown |
P. luminescens w14 |
|
From (type III secretion system, partial sequence) GI:27550090 |
6.1 |
16883.6 |
1 |
0.11 |
0.93 |
0.11 |
0.16 |
| 11 |
Hypothetical protein, plu1886 |
P. luminescens TT01 |
|
Hypothetical transmembrane protein |
5.88 |
15588.6 |
1 |
1.53 |
2.83 |
1.57 |
0.43 |
| 13 |
Macrolide transporter subunit MacA, plu1590 |
P. luminescens TT01 |
macA
|
Probable macrolide-specific ABC transporter; confers macrolide resistance via active drug efflux |
6.95 |
40743.2 |
1 |
0 |
0 |
0 |
0 |
| 17 |
Sec-independent protein translocase protein, plu4410 |
P. luminescens TT01 |
tatA
|
Sec-independent protein translocase protein |
6.18 |
9289.9 |
1 |
0.76 |
0.81 |
0.72 |
0.23 |
| 42 |
Na-binding protein HU-alpha (NS2) (HU-2), plu0492 |
P. luminescens TT01 |
dbhA
|
Na-binding protein HU-alpha (NS2) (HU-2) |
9.1 |
9407 |
1 |
2.1 |
2.3 |
0.59 |
0.99 |
|
Information and regulatory pathways
|
| 14 |
DNA-binding transcriptional regulator HexR, plu2121 |
P. luminescens TT01 |
hexR
|
Represses the expression of the zwf, eda, glp and gap
|
6.97 |
31694.5 |
1 |
2.2 |
1.96 |
1.92 |
0.91 |
| 16 |
DnaK transcriptional regulator DksA, plu0876 |
P. luminescens TT01 |
dksA
|
DnaK transcriptional regulator DksA |
5.04 |
17415.8 |
1 |
0 |
0.05 |
0.65 |
0 |
| 20 |
Nucleotide-binding protein, plu3881 |
P. luminescens TT01 |
|
Similar to Unknown protein YajQ of E. coli
|
5.77 |
18311.4 |
1 |
1.47 |
0.89 |
1.48 |
1.09 |
| 22 |
Transcriptional repressor MprA, plu1277 |
P. luminescens TT01 |
mprA
|
DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB” |
7.01 |
20365.5 |
1 |
1.67 |
1.18 |
1.38 |
1.09 |
| 27 |
Hypothetical protein, plu0318 |
P. luminescens TT01 |
|
Similar to AidA protein of Ralstonia solanacearum
|
5.7 |
22068.3 |
1 |
1.03 |
1.68 |
0.86 |
0.87 |
| 49 |
Periplasmic protein disulfide isomerase I, plu0381 |
P. luminescens TT01 |
dsbA
|
Disulfide interchange protein DsbA precursor |
7.7 |
22954.8 |
1 |
3.8 |
1.57 |
3.49 |
3.62 |
| 37 |
Protease precursor DegQ, plu4018 |
P. luminescens TT01 |
degQ
|
Protease precursor DegQ |
9.12 |
48028.9 |
1 |
0 |
0 |
0 |
0 |
| 38 |
Protease precursor DegQ, plu4018 |
P. luminescens TT01 |
degQ
|
Protease precursor DegQ |
9.12 |
48028.9 |
1 |
0 |
0 |
0 |
0 |
|
Energy production and conversion
|
| 24 |
GD22749 |
Drosophilia simulans
|
Dism\GD22749
|
Chromosome segregation ATPases [Cell division and chromosome partitioning]; COG1196 |
5.23 |
76326.8 |
1 |
1.39 |
0 |
<0.01 |
<0.01 |
| 23 |
Hypothetical protein, plu2075 |
P. luminescens TT01 |
|
Similar to 3-oxoacyl-[acyl-carrier protein] reductase |
8.55 |
25032.6 |
1 |
0.12 |
0.31 |
0.45 |
0.33 |
| 35 |
WblA protein, plu4796 |
P. luminescens TT01 |
wblA
|
Probable lipopolysaccharide biosynthesis protein; Similar to putative UDP-glucose/GDP-mannose dehydrogenase |
5.86 |
48484 |
1 |
2.1 |
0 |
2.07 |
0.05 |
| 40 |
Catalase, plu3068 |
P. luminescens TT01 |
katE
|
Catalase |
6.92 |
55509.5 |
1 |
0 |
0 |
0 |
0 |
| 41 |
Catalase plu3068 |
P. luminescens TT01 |
katE
|
Catalase |
6.92 |
55509.5 |
1 |
0 |
0 |
0 |
0 |
| 56 |
Phosphoglycero mutase, plu1471 |
P. luminescens TT01 |
gpmA
|
Catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate |
5.62 |
28396.7 |
1 |
1.64 |
2.88 |
2.02 |
3.5 |
|
Phage-related proteins
|
| 28 |
Hypothetical protein, plu3012 |
P. luminescens TT01 |
|
Probable phage protein; Similar to tail fiber assembly protein from bacteriophage |
4.67 |
21467.8 |
1 |
0.68 |
0.88 |
2.36 |
0.44 |
| 29 |
Hypothetical protein, plu2035 |
P. luminescens TT01 |
|
Some similarities with putative tail fiber protein of prophage |
4.23 |
23641.5 |
1 |
0 |
3 |
0.42 |
0.88 |
| 39 |
Hypothetical protein, plu3803 |
P. luminescens TT01 |
|
Some similarities with prophage tail fiber protein |
6.37 |
66850.4 |
1 |
0.23 |
0.5 |
0.1 |
0 |
| 60 |
Hypothetical protein, plu3032 |
P. luminescens TT01 |
|
Putative bacteriophage protein; Some similarities with Unknown protein of Photorhabdus
|
6.08 |
22021.6 |
1 |
1.93 |
2.55 |
2.14 |
4.66 |
| 63 |
Hypothetical protein, plu3012 |
P. luminescens TT01 |
|
Probable phage protein; Similar to tail fiber assembly protein from bacteriophage |
4.67 |
21467.8 |
1 |
1.66 |
1.72 |
5.27 |
0.48 |
|
Flagellin
|
| 31 |
Flagellin, plu1954 |
P. luminescens TT01 |
fliC
|
Structural flagella protein |
5.19 |
38183.6 |
1 |
0 |
0.1 |
0.87 |
0 |
|
Post-translational modification
|
| 61 |
PTS system, N-acetyl- galactosamine-specific IIB component 2 (EIIB-AGA’) (N-acetyl- galactosamine-perme, plu0835 |
P. luminescens TT01 |
agaV
|
Probable PTS system; Highly similar to PTS system, cytoplasmic, N-acetylgalactosamine-specific |
6.51 |
17774.4 |
1 |
3.87 |
2.18 |
4.31 |
1.5 |
|
Uknown
|
| 2 |
Hypothetical protein, plu0661 |
P. luminescens TT01 |
|
Highly similar to Unknown protein YgdH of E. coli
|
5.95 |
51257.2 |
1 |
2.74 |
0.81 |
2.51 |
1.76 |
| 21 |
Unknown |
Fanconi anemia group D1 protein |
LOC725687
|
Similar to Breast cancer type 2 susceptibility protein |
8.75 |
82829.5 |
1 |
0.05 |
0 |
0 |
0 |
| 33 |
Hypothetical protein, plu3611 |
P. luminescens TT01 |
|
Similar to Unknown protein YggE of E. coli
|
5.97 |
25893.5 |
1 |
0 |
2.33 |
0.2 |
0.4 |
| 34 |
Hypothetical protein MHP7448_0445 |
Mycoplasma hyopneumoniae 7448 |
|
GI:72080777 |
9.17 |
275940.9 |
1 |
0.39 |
0.19 |
0.1 |
0.05 |
| 59 |
Hypothetical protein UM02446.1 |
Ustilago maydis 521 |
|
GI:124514614 |
8.96 |
130494.3 |
1 |
11.46 |
2.78 |
6.42 |
6.6 |
