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. Author manuscript; available in PMC: 2012 Aug 18.
Published in final edited form as: Nat Rev Immunol. 2011 Oct 14;11(11):723–737. doi: 10.1038/nri3073

Table 2.

Combinatorial marker systems for phenotyping activated macrophages*

Marker type Associated signalling
molecules
Gene (alternative names) Comments
M2 markers STAT6 phosphorylation in vivo and ex vivo without further perturbation Relma (Fizz1, Retnla) Highly induced by IL-4 and IL-13. Not expressed in humans
Socs2 Highly induced by IL-4 and IL-13. Not macrophage-specific
Irf4 Highly induced by IL-4 and IL-13. Not macrophage-specific
Chia (Amcase) Highly induced by IL-4 and IL-13. Not macrophage-specific
Chi3l1 (Gp39, Ykl40) Highly induced by IL-4 and IL-13. Not macrophage-specific
Chi3l2 (Ykl39) Not expressed in mice
Chi3l3(Ym1) Not expressed in humans. Can be highly induced by IL-4 and IL-13 in some situations
Cxcl13 Chemokine linked to TH2 cell responses
Ccl12 Chemokine linked to TH2 cell responses
Ccl24 Chemokine linked to TH2 cell responses
Klf4 Transcription factor induced by IL-4 in both mouse and human macrophages171
M1 markers
  • STAT3 and/or STAT1 phosphorylation in vivo and ex vivo (linked to IL-6 and IL-10 in the microenvironment)

  • Evidence of an interferon-γ signature

  • Absence of STAT6 phosphorylation in vivo and ex vivo

Marco Calmodulin-associated. Also found in other activation scenarios
Socs3 Induced by IL-10, IL-6 and many other factors
Nos2 Not readily expressed in human macrophages
Il12b Highly induced in M1 activation
Ptgs2 (Cox2) Highly induced in M1 activation
Il23α (Il23p19) Highly induced in M1 activation
Ido1 Useful marker of human and mouse exposure to type 1 and 2 interferons
Context-dependent markers Arg1 Can be induced by the STAT6 or STAT3 pathways172,173
Il10 Differentially produced by most, if not all macrophages174
Mrc1 Linked with M2 macrophages but widely expressed on many macrophage subsets

Arg1, arginase 1; Ccl, CC-chemokine ligand; Chi3l, chitinase 3-like; Chia, chitinase, acidic; Cxcl13, CXC-chemokine ligand 13; Ido1, indoleamine 2,3-dioxygenase 1; Il, interleukin; Irf4, interferon regulatory factor 4; Klf4, Krüppel-like factor 4; Marco, macrophage receptor with collagenous structure; Mrc1, mannose receptor, C type 1; Nos2, nitric oxide synthase 2, inducible; Ptgs2, prostaglandin-endoperoxide synthase 2; Relma, resistin-like molecule alpha; Socs, suppressor of cytokine signalling; STAT, signal transducer and activator of transcription; TH2, T helper 2.

*

Shown are marker combinations that can be used to assign phenotypic characteristics to a mouse macrophage population. The use of multiple markers, especially when combined with assays for phosphorylated STATs, avoids the problems associated with markers, such as ARG1, that are widely expressed in either M1 or M2 polarized environments.

A notable exception is the infection of macrophages by Fransicella spp. — in this case, autocrine or paracrine IL-4 and IL-13 production is enforced by a myeloid differentiation primary response protein 88 (MYD88)-dependent pathway175, and the subsequent activation of STAT6 favours bacterial survival.