Table I.
Comparison of the BPdG levels measured in DNA from BP-treated MCF-7 cells by BPDE–DNA SCIA and 32P-postlabelling
Purification methods | SCIAa, mean ± SD adducts per 108 | Mean % CV1 (within-day) | Mean % CV2 (inter-day) | 32P-postlabellingb, mean ± SD adducts per 108 | Mean % CV1 (within-day) | Mean % CV2 (Inter-day) | Ratioc | P1 | P2 |
Phenol extraction | 1162 ± 256 | 20.7 | 8.9 | 1682 ± 496 | 27.0 | 26.3 | 0.7 | 0.11 | 0.27 |
Qiagen columns | 871 ± 92 | 10.25 | 6.5 | 2048 ± 340 | 40.3 | 15.7 | 0.4 | <0.01 | <0.01 |
Salting out | 799 ± 104 | 11.95 | 9.3 | 1712 ± 308 | 16.3 | 12.8 | 0.5 | <0.01 | 0.05 |
%CV1 refers to the within-day coefficient of variance for adduct levels measured by either method in independently extracted DNA samples, while %CV2 refers to the inter-day coefficient of variance of the same samples analysed twice or three times on different days; P1: P value for independent t-test for the inter-day mean adducts levels obtained by the two methods; P2: P value for paired t-test.
Triplicate DNA samples were extracted by the three methods and assayed independently twice.
Triplicate DNA samples were extracted by the three methods and assayed independently three times.
Ratio of adduct levels measured by SCIA to those measured by 32P-postlabelling.