Table 1.
List of sRNAs identified by RACE.
| ID in SOLiD1 | Start2 | Stop | Length (bases) | Coding3 | IGR #2 | 5′ Gene | Coding | 3′ Gene | Coding | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
| ID158 | 146754 | 146582 | 173 | R | IGR0121 | PGN_0141 | F | PGN_0142 | F | RF01693 (Bacteroidales-1) |
| ID266 | 254941 | 255103 | 163 | F | IGR0204 | PGN_0235 | F | PGN_0236 | F | |
| ID317 | 307824 | 308091 | 268 | F | IGR0247 | PGN_0286 | R | mfa1 | F | |
| ID317 | 307824 | 308042 | 218 | F | IGR0247 | PGN_0286 | R | mfa1 | F | |
| ID319 | 311532 | 311483 | 50 | R | IGR0249 | PGN_0288 | F | PGN_0289 | F | |
| ID869 | 821427 | 820645 | 783 | R | IGR0648 | PGN_0748 | F | PGN_0749 | F | |
| ID1321 | 1229785 | 1229553 | 233 | R | IGR0960 | PGN_1103 | F | PGN_1104 | R | tRNA-Arg-4 on F-strand |
| ID1520 | 1410117 | 1409844 | 274 | R | IGR1099 | PGN_1262 | R | PGN_1263 | R | |
| ID2004 | 1865668 | 1865314 | 355 | R | IGR1456 | PGN_1669 | R | PGN_1670 | F | |
| ID2089 | 1953887 | 1954115 | 229 | F | IGR1520 | PGN_1739 | F | PGN_1740 | R | |
| ID2261 | 2123160 | 2123379 | 220 | N/D | IGR1662 | hagB | F | PGN_1905 | R | |
| ID2381 | 2238240 | 2238533 | 294 | F | IGR1746 | PGN_1999 | R | PGN_2000 | R | |
| ID2096 | 1957637 | 1957857 | 221 | F | IGR1524 | PGN_1744 | R | PGN_1745 | F | tRNA-Lys-1 on F-strand |
1From Table S4 in Supplementary Material.
2Designation from http://www.oralgen.lanl.gov
3F, forward; R, reverse; N/D, not determined Figure.