Table 1.
Form 1 “Pre-extrusions 1 and 2 mixed states” |
Form 2 “Pre-extrusion 2 state” |
Form 3 “Extrusion state” |
CusB-D405A- Cu(I) |
CusB-R669A- Cu(I) |
|
---|---|---|---|---|---|
Data Collection | |||||
Space group | R32 | R32 | R32 | R32 | R32 |
Cell dimensions | |||||
a, b, c (Å) | 160.34, 160.34, 685.07 |
159.64, 159.64, 679.83 |
159.79, 139.79, 683.09 |
159.64, 159.64, 681.10 |
159.79, 159.79, 683.09 |
α, β, γ (°) | 90, 90, 120 | 90, 90, 120 | 90, 90, 120 | 90, 90, 120 | 90, 90, 120 |
Wavelength (Å) | 1.37 | 0.979 | 0.979 | 0.979 | 0.979 |
Resolution (Å) | 50-3.42 (3.51-3.45) |
50-3.90 (4.00-3.90) |
50-3.30 (3.39-3.30) |
50-3.10 (3.18-3.10) |
50-4.20 (4.31-4.20) |
Rpim (%)a | 8.8 (45.6) | 10.2 (46.7) | 6.4 (47.2) | 6.6 (41.0) | 12.6 (31.9) |
Average I/σI | 8.9 (2.0) | 6.8 (2.0) | 11.0 (1.9) | 10.3 (2.5) | 6.4 (2.8) |
Completeness (%) | 99.9 (100) | 93.8 (95.1) | 100 (100) | 100 (100) | 99.9 (100) |
Redundancy | 5.3 (5.4) | 5.7 (5.8) | 12.4 (12.4) | 5.3 (5.4) | 5.2 (5.4) |
Total reflections | 239,469 | 164,514 | 638,674 | 326,934 | 131,349 |
Unique reflections | 45,301 | 28,809 | 51,324 | 61,292 | 25,268 |
Refinement | |||||
PDB code | 3T56 | 3T51 | 3T53 | 4DNT | 4DOP |
Resolution (Å) | 50-3.45 | 50-3.90 | 50-3.30 | 50-3.10 | 50-4.20 |
No. reflections | 41,030 | 26,937 | 42,148 | 59,909 | 23,337 |
Rwork/Rfree | 25.9/29.4 | 25.8/32.4 | 24.7/28.5 | 21.9/24.4 | 22.1/26.8 |
R.m.s deviations | |||||
Bond lengths (Å) | 0.003 | 0.004 | 0.003 | 0.003 | 0.003 |
Bond angles (°) | 0.747 | 0.724 | 0.619 | 0.675 | 0.617 |
Ramachandran | |||||
most favored | 84.4 | 78.5 | 86.1 | 87.9 | 85.8 |
additional allowed | 14.7 | 20.5 | 13.6 | 11.8 | 13.7 |
generously allowed | 0.9 | 0.9 | 0.3 | 0.3 | 0.4 |
disallowed | 0.1 | 0.1 | 0 | 0 | 0.1 |
Because of the high multiplicity, Rpim (precision indicating merging R-factor)22 was used to obtain the high-resolution cut-off.