Table 2.
SSR motifs and their frequency in 3′ UTR, 5′ UTR and coding regions
| Estimated location | ||||||
|---|---|---|---|---|---|---|
|
SSR |
motif |
3' UTR |
5' UTR |
coding |
undetermined |
Total |
| di |
AT |
154 |
70 |
73 |
6 |
303 |
| |
AG |
42 |
53 |
155 |
6 |
256 |
| |
AC |
27 |
18 |
46 |
3 |
94 |
| |
CG |
0 |
0 |
2 |
0 |
2 |
| |
sub-total |
223 |
141 |
276 |
15 |
655 |
| tri |
AAG |
19 |
36 |
285 |
2 |
342 |
| |
ATG |
19 |
32 |
178 |
1 |
230 |
| |
AGG |
7 |
49 |
170 |
0 |
226 |
| |
AGC |
18 |
34 |
129 |
2 |
183 |
| |
AAT |
55 |
22 |
49 |
2 |
128 |
| |
ACC |
6 |
7 |
64 |
0 |
77 |
| |
GGC |
9 |
15 |
38 |
0 |
62 |
| |
AAC |
11 |
9 |
32 |
0 |
52 |
| |
ACG |
0 |
1 |
11 |
0 |
12 |
| |
AGT |
2 |
1 |
4 |
0 |
7 |
| |
sub-total |
146 |
206 |
960 |
7 |
1319 |
| tetra |
|
61 |
65 |
60 |
8 |
194 |
| penta |
|
180 |
193 |
349 |
19 |
741 |
| hexa |
|
154 |
225 |
703 |
12 |
1094 |
| compound |
|
15 |
5 |
35 |
1 |
56 |
| Total | 779 | 835 | 2383 | 62 | 4059 | |