Table 6. Best BLAST match of contigs assembled from deep sequencing of the CCD+ and CCD− cDNA libraries derived from pooled colony samples of total RNA.
| Taxon | Number of contigs |
| Apis mellifera | 1683 |
| Other insect* | 35 |
| Crithidia ** | 10 |
| Nosema apis | 10 |
| Nosema ceranae | 8 |
| Varroa destructor | 12 |
| Fungi | 19 |
| Plants | 58 |
| Uncultured eukaryote | 7 |
| Nematoda | 1 |
| Eubacteria | 303 |
| Black queen cell virus | 5 |
| Deformed wing virus | 6 |
| Israeli acute paralysis virus | 9 |
| Kashmri bee virus | 2 |
| Sacbrood virus | 1 |
| Lake Sinai Virus 1 | 25 |
| Lake Sinai Virus 2 | 85 |
| Partitiviridae | 3 |
| Tobacco Ring Virus | 2 |
| No match | 129 |
*
Best BLAST match was to ribosomal sequence of another insect species but contig is presumed to derive from A. mellifera.
**
Includes the trypanosome genera Leishmania and Leptomonas.