Table 1.
RNA 3′end | RNAP | Fluorophore |
KTGT (μM) |
||
---|---|---|---|---|---|
base\sugar | rRiboside | 2′-Ddeoxy | 3′-Deoxy | ||
Adenine | Wild-type | 6-MI i − 8 → i − 7 | 0.13 ± 0.04 | 2.1 ± 0.9 | 0.84 ± 0.38 |
Cytosine | Wild-type | 6-MI i − 8 → i − 7 | 0.11 ± 0.04 | 3.8 ± 1.1 | 1.1 ± 0.7 |
Guanine | Wild-type | 6-MI i − 8 → i − 7 | 0.18 ± 0.05 | 3.6 ± 1.0 | 1.3 ± 0.3 |
Uracil | Wild-type | 6-MI i − 8 → i − 7 | 0.050 ± 0.001 | 2.8 ± 0.6 | 2.5 ± 0.2 |
Adenine | Wild-type | 2-AP i + 1 → i + 2 | 0.15 ± 0.05 | 2.3 ± 0.6 | 1.7 ± 0.5 |
Adenine | Wild-type | 2-AP i → i + 1 (RNA) | 0.12 ± 0.10 | ||
Adenine | β′M932A | 6-MI i − 8 → i − 7 | 0.65 ± 0.16 | ||
Adenine | β′R933A | 6-MI i − 8 → i − 7 | 1.64 ± 0.45 | ||
Adenine | β′H936A | 6-MI i − 8 → i − 7 | 0.94 ± 0.15 |
Errors are standard deviations of the best-fit estimates and were calculated by nonlinear regression of TEC fluorescence versus TGT concentration data using the model described in Supplementary Methods.