Table 2.
RW1 gene cluster representatives with significantly changed expression levels or proportional abundances in transposon libraries.
| Swit Locus | Name | Tn library1 |
Expression, fold change2 |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TN01 | SAL | DBF | SAL/PHE | SAL/DBF | DBF/PHE | DBF shock | Chemostat shift |
|||||
| 30 m | 1 h | 2 h | 6 h | |||||||||
| STRESS RESPONSE | ||||||||||||
| 0016 | Redoxin domain containing protein | + | + | + | 0.99 | 1.75 | 2.51 | 5.13 | 3.76 | 2.69 | ||
| 0847 | Glutathione S-transferase domain containing protein | ± | + | + | 2.50 | 1.82 | 1.89 | 2.57 | 2.23 | 1.34 | ||
| 2245 | Glutathione S-transferase domain containing protein | + | + | + | 3.10 | 1.56 | 3.16 | 4.72 | 4.11 | 2.28 | ||
| 3730 | Catalase | + | + | + | 206.50 | 1.87 | 1.16 | 2.73 | 10.6 | 4.89 | ||
| 3741 | 1-Cys peroxiredoxin | − | − | − | 28.84 | 1.60 | 2.33 | 5.46 | 8.06 | 1.67 | ||
| 3743 | 1-Cys peroxiredoxin | + | + | + | 102.54 | 1.83 | 1.44 | 2.89 | 12.7 | 3.12 | ||
| 3979 | ATP-dependent DNA ligase | + | + | + | 2.46 | 1.35 | 2.39 | 3.61 | 2.45 | 1.53 | ||
| 3982 | DNA ligase D | + | + | + | 3.25 | 1.05 | 3.56 | 7.31 | 5.43 | 2.68 | ||
| 4092 | DNA repair protein RadA | ± | − | ± | 1.22 | 0.89 | 1.39 | 1.72 | 2.20 | 2.31 | ||
| 4209 | Glutathione-dependent formaldehyde-activating, GFA | + | − | + | 3.56 | 1.82 | 3.05 | 5.54 | 4.32 | 2.41 | ||
| 5282 | DNA ligase D | + | + | + | 2.20 | 1.12 | 2.89 | 4.17 | 3.48 | 1.93 | ||
| 5311 | Catalase | + | ± | ± | 2.91 | 1.27 | 4.56 | 6.41 | 4.53 | 2.23 | ||
| DNA METABOLIC PROCESS | ||||||||||||
| 0001 | Chromosomal replication initiator protein DnaA | − | − | − | 0.25 | 0.68 | 0.40 | 0.30 | 0.23 | 0.31 | ||
| 2767 = 3050 = 4905 = 5124 | IS4 family transposase | ND | ND | ND | 4.24 | 4.44 | 1.21 | 0.90 | 1.04 | 1.26 | ||
| 4903 | Transposase IS3/IS911 family protein | ND | ND | ND | 0.17 | 1.26 | 10.50 | 0.83 | 0.51 | 0.36 | 0.52 | |
| 4930 | Transposase Tn3 family protein | + | + | + | 0.46 | 1.96 | 1.89 | 0.95 | 0.93 | 1.16 | 0.96 | |
| 5075 | Transposase Tn3 family protein | + | + | + | 2.50 | 2.00 | 1.47 | 1.33 | 1.19 | 1.23 | ||
| 5078 | Transposase IS66 | ND | ND | ND | 2.14 | 2.48 | 2.33 | 0.97 | 1.05 | 1.34 | 1.46 | |
| 5109 | IS4 family transposase | + | + | + | 2.64 | 1.99 | 1.16 | 1.24 | 1.16 | 1.30 | ||
| TRANSCRIPTION AND TRANSLATION | ||||||||||||
| 0431 | RNA polymerase sigma factor RpoD | − | − | − | 0.29 | 0.54 | 0.62 | 0.65 | 0.63 | 0.85 | ||
| 1325 | Ribosomal protein L17 | + | − | + | 0.09 | 0.53 | 0.35 | 0.25 | 0.19 | 0.13 | ||
| 1358 | Ribosomal protein S12 | − | − | − | 0.02 | 0.27 | 0.47 | 0.34 | 0.23 | 0.20 | ||
| 3924 | ECF subfamily RNA polymerase sigma 24 factor | + | + | + | 10.36 | 2.26 | 4.27 | 4.28 | 2.58 | 1.16 | ||
| 3972 | ECF subfamily RNA polymerase sigma 24 factor | − | − | − | 1.54 | 1.17 | 0.92 | 1.09 | 1.47 | 2.57 | ||
| 4736 | ECF subfamily RNA polymerase sigma 24 factor | ± | − | + | 1.27 | 0.94 | 1.27 | 1.42 | 1.49 | 2.25 | ||
1+, Present in the library; −, absent in the library; ±, present at less than one-tenth compared to the starting library; ND, no reads assignable (duplicated genes).
2Bold-type setting: statistically significant change (p < 0.05) compared to control condition.