Table 1.
Expression profile of select B5RBPs mined using the RNA-seq data from the publically available Potato Genome Database (Xu et al., 2011).
Gene | Flower | In vitro plant | Sprout | Leaf | Petiole | SAM | Stem | Stolon | Young tuber | Root |
---|---|---|---|---|---|---|---|---|---|---|
B5RBP1 | 43 | 170 | 120 | 10 | 39 | 46 | 62 | 175 | 407 | 151 |
B5RBP2 | 91 | 144 | 191 | 129 | 152 | 201 | 113 | 252 | 257 | 165 |
B5RBP3 | 0 | 14 | 33 | 0 | 77 | 23 | 46 | 149 | 590 | 53 |
StLSH3 | 4 | 15 | 12 | 0 | 27 | 5 | 3 | 17 | 3 | 11 |
B5RBP4 | 375 | 364 | 414 | 354 | 511 | 199 | 377 | 420 | 418 | 606 |
B5RBP5 | 76 | 68 | 93 | 40 | 83 | 63 | 70 | 65 | 71 | 92 |
B5RBP6 | 67 | 91 | 46 | 103 | 334 | 48 | 59 | 70 | 40 | 104 |
B5RBP7 | 119 | 229 | 392 | 111 | 250 | 188 | 141 | 184 | 184 | 238 |
StHSP70 | 65 | 64 | 108 | 44 | 100 | 122 | 140 | 236 | 192 | 160 |
StBEL5 | 35 | 52 | 60 | 39 | 170 | 25 | 77 | 24 | 55 | 42 |
Nine organs and an in vitro plantlet are presented and abundance values are shown in FPKMs (fragments per kb per million mapped reads). StBEL5 is shown as a relative control. The potato HSP70 protein is included here because it was selected during the screen (Table A4 in Appendix) and previously was identified as a member of a phloem-mobile RNP complex in pumpkin (Ham et al., 2009).