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Results of the JM procedure. (A) JM compared with HAPPY in the F2 data. There is no improvement in the ability to reproduce the original EMMA results. (B) HS4 results show better ability of JM to reproduce EMMA results. (C) HS-CC results, JM has best improvement of JM of HAPPY. (D) Overlap of eQTLs (p < 10–5) across the three methods with JM detecting a large portion of intersection of HAPPY and EMMA results.
