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. Author manuscript; available in PMC: 2012 Aug 27.
Published in final edited form as: J Chem Theory Comput. 2010;6(5):6–10. doi: 10.1021/ct900630n

TABLE II.

Magnitude and effect of perturbation to the active site dynamics sequence

(RC HRO H)RC Orange
RD Aa ΔRD Ab ΔRasc Δθ d ρNIe
−0.197 – −0.180 2.78 3.88×10−3 8.54×10−5 2.3 (2.6) 82.4 (35.4)
−0.152 – −0.127 2.69 2.51×10−3 2.43×10−4 5.4 (4.9) 79.3 (35.9)
−0.125−0.110 2.67 1.10×10−3 1.57×10−4 12.2 (32.0) 69.1 (39.5)
−0.110 – −0.0671 2.66 6.82×10−4 5.32×10−4 4.8 (5.1) 79.2 (35.2)
a

The average donor-acceptor distance in Å computed using only geometries in the given reaction coordinate range.

b

Change in the donor-acceptor distance sequence between the perturbed and unperturbed measurement sets: 16i6(RDAiRDAipert)2, in Å. The factor of six occurs since each range contains six geometries, all of which are involved in the permutation.

c

Change in the active site geometry sequence between the perturbed and unperturbed measurement sets. This is computed using the active site distance matrices.

d

Angle between the ground proton (deuteron) eigenstate sequence in degrees.

e

Final transfer probability for the proton (deuteron) calculated using Eq. (7). The original transfer probability is 83.4 (35.6).