Table 5. Gene sets from the Molecular Signatures Database (MSigDB) corresponding to 2 of the 5 major collections [56].

Collection	No. gene	Enriched sets	Nominal	FDR	NES
	sets		p-value	q-value
C2 Curated	3272
Canonical Pathways	880	mTOR pathway	0.0	0.191	1.72
		Rho pathway	0.004	0.197	1.74
		Integration of energy metabolism	0.008	0.219	1.783
		Metabolism of proteins	0.0	0.188	1.809
C4 Computational	881
Cancer Modules	454	module 159	0.002	0.148	1.61
		module 273	0.002	0.158	1.62
		module 346	0.013	0.177	1.67

Summary of the the GSEA results: some of the enriched gene sets involved in cancer and metabolism are shown (Nom. pval and FDR ).