Table 4.
Frequency of different repeat motifs in perfect SSRs (≥15 bp and ≥18 bp)
| Number of Motif copies | Mono- | Di- | Tri- | Tetra- | Penta- | Hexa- | Total | Frequency (%) |
|---|---|---|---|---|---|---|---|---|
| 2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0.00 (0.00) |
| 3 |
0 |
0 |
0 |
0 |
543 |
742 |
1,285 (742) |
19.81 (20.20) |
| 4 |
0 |
0 |
0 |
257 |
93 |
150 |
500 (243) |
7.71 (6.61) |
| 5 |
0 |
0 |
1,075 |
59 |
10 |
32 |
1,176 (101) |
18.13 (2.75) |
| 6 |
0 |
0 |
452 |
14 |
1 |
4 |
471 |
7.26 (12.82) |
| 7 |
0 |
0 |
169 |
3 |
1 |
3 |
176 |
2.71 (4.79) |
| 8 |
0 |
828 |
81 |
2 |
2 |
1 |
914 (86) |
14.09 (2.34) |
| 9 |
0 |
549 |
45 |
0 |
0 |
0 |
594 |
9.16 (16.17) |
| 10 |
0 |
358 |
13 |
0 |
1 |
0 |
372 |
5.74 (10.13) |
| 11 |
0 |
254 |
4 |
0 |
1 |
0 |
259 |
3.99 (7.05) |
| 12 |
0 |
178 |
2 |
0 |
0 |
0 |
180 |
2.78 (4.90) |
| 13 |
0 |
103 |
1 |
0 |
0 |
0 |
104 |
1.60 (2.83) |
| 14 |
0 |
70 |
0 |
0 |
0 |
0 |
70 |
1.08 (1.91) |
| 15 |
51 |
50 |
0 |
0 |
0 |
0 |
101 (50) |
1.56 (1.36) |
| 16 |
40 |
52 |
1 |
0 |
0 |
0 |
93 (53) |
1.43 (1.44) |
| 17 |
17 |
28 |
2 |
0 |
0 |
0 |
47 (30) |
0.72 (0.82) |
| 18 |
11 |
19 |
0 |
0 |
0 |
0 |
30 |
0.46 (0.82) |
| 19 |
4 |
7 |
0 |
0 |
0 |
0 |
11 |
0.17 (0.30) |
| 20 |
2 |
16 |
0 |
0 |
0 |
0 |
18 |
0.28 (0.49) |
| 21 |
0 |
10 |
0 |
0 |
0 |
0 |
10 |
0.15 (0.27) |
| 22 |
1 |
19 |
0 |
0 |
0 |
0 |
20 |
0.31 (0.54) |
| 23 |
0 |
23 |
0 |
0 |
0 |
0 |
23 |
0.35 (0.63) |
| 24 |
2 |
21 |
0 |
0 |
0 |
0 |
23 |
0.35 (0.63) |
| 25 |
1 |
5 |
0 |
0 |
0 |
0 |
6 |
0.09 (0.16) |
| 26 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
0.03 (0.05) |
| Total |
129 |
2,592 |
1,845 |
335 |
652 |
932 |
6,485 |
100.00 |
| (21) |
(1,764) |
(770) |
(78) |
(109) |
(932) |
(3,674) |
||
| Frequency (%) |
1.99 |
39.97 |
28.45 |
5.17 |
10.05 |
14.37 |
100.00 |
|
| (0.57) | (48.01) | (20.96) | (2.12) | (2.97) | (25.37) |
Data for SSRs ≥18 bp is given in brackets.