Table 2.
SVs affecting coding regions
| MGI gene | Chr | SV start | SV stop | Ancestral Event | Known function |
|---|---|---|---|---|---|
| Soat1 | 1 | 158394620 | 158401436 | del | Hair interior defects |
| Olfr1055 | 2 | 86179898 | 86186982 | IAP ins | Olfactory |
| Fcrl5 | 3 | 87245084 | 87245947 | del | Infection and immunity |
| Nes | 3 | 87780530 | 87780662 | VNTR | Brain development |
| Pglyrp3 | 3 | 91831862 | 91835385 | del | Infection and immunity |
| Skint4,3,9* | 4 | 111731004 | 112272814 | ins | Infection and immunity |
| Fv1 | 4 | 147244398 | 147245739 | del | Infection and immunity |
| Ugt2b38 | 5 | 87850554 | 87854999 | del | Metabolism |
| Klrb1a | 6 | 128559593 | 128559740 | del | Infection and immunity |
| Klri2 | 6 | 129689526 | 129691211 | del | Infection and immunity |
| Tas2r120* | 6 | 132580541 | 132613777 | del+linked ins (326 bp) | Taste |
| Tas2r103 | 6 | 132985563 | 132986696 | del | Taste |
| Zfp607* | 7 | 28646761 | 28671650 | del | DNA-binding |
| Krtap5-5 | 7 | 149415121 | 149415210 | VNTR | Hair formation |
| Trim5,12a* | 7 | 111397607 | 111479433 | ins | Infection and immunity |
| Defb8 | 8 | 19447465 | 19450575 | ins+del (54 bp) | Infection and immunity |
| Zfp872 | 9 | 22004856 | 22005023 | VNTR | DNA-binding |
| Olfr913 | 9 | 38402589 | 38403498 | del | Olfactory |
| Rtp3 | 9 | 110889280 | 110889465 | VNTR | Bone density |
| Nlrp1c* | 11 | 71046193 | 71101410 | ins | Embryonic development |
| Fam110c | 12 | 31759321 | 31759461 | VNTR | Cell migration |
| Olfr234 | 15 | 98328544 | 98328861 | del | Olfactory |
| Krtap16-1 | 16 | 88874294 | 88874392 | VNTR | Hair formation |
| Amd2* | 18 | 64607747 | 64609669 | ins | Biosynthesis of polyamines |
MGI: Mouse Genome Informatics; VNTR: Variable Number Tandem Repeat.
*
indicates that the structural variant overlaps the entire gene. Unless there is a plus sign (“+”), coordinates refer to the exact coordinates as delineated by Sanger sequencing.