Table 5. Differentially regulated genes encoding proteins involved in proteolysis.

Contig name	Putative gene product	Annotation e-Value	Fold change
			2°C low PAR	2°C high PAR	17°C low PAR	17°C high PAR
Contig07342	26s protease regulatory subunit 6a homolog	2e-156	−1.2	1.3	1.9	3.3
Contig11906	26s protease regulatory subunit 6b homolog	8.7e-174	−1	−1.3	1.6	2.1
Contig14531	26s protease regulatory subunit 8 a	1.6e-164	−1.1	−1.9	1.8	2.1
Contig21902	ATP-dependent clp protease proteolytic subunit	3.2e-36	1.3	2.2	1	1.5
Contig09850	ATP-dependent protease atpase subunit	8.9e-117	1.1	1.1	1.4	4.7
Contig02945	Cathepsin b-like cysteine proteinase 5	8.4e-31	−1	−1.1	−1.1	3.1
Contig17610	Cysteine proteinase 2	3.6e-12	−1.4	−1.4	1.3	2.5
Contig00569	Papain family cysteine protease containing protein	2.6e-56	−1.1	−1.2	2.3	9.2
Contig03402	Proteasome subunit alpha type 2	2.1e-119	−1.3	−1.3	2.2	2.6
Contig13292	Ubiquitin	1.1e-55	−1.1	1.5	1.2	3.1
Contig12782	Ubiquitin conjugation factor	7.7e-162	−1.3	−1.4	1.6	2.4
Contig07882	Ubiquitin specific protease 39 and scrap assembly	1.5e-112	1.1	−1.1	1.3	2.6
Contig13903	Ubiquitin-conjugating enzyme	2.5e-53	−1.4	−1.3	1.2	4.4
Contig02894	Ubiquitin-like modifier-activating enzyme 1	5.8e-119	1.5	−1.2	2.1	4.3

All displayed genes were differentially expressed with p<0.01 and a fold change >2 (numbers in bold).