Table 2. SNPs analyzed in P2RX7 gene.
MAF | MAF | MAF | Genotyping | |||
SNP | Regiona | Variationb | RC | nonRC | controls | success rate(%) |
rs35933842 (A/C*) | Intron 1 | Essential Splice site | 0.0045 | 0.0056 | 0.0053 | 87.5 |
rs208294 (A/G*) | Exon 5 | His155Tyr | 0.39 | 0.45 | 0.42 | 86.4 |
rs7958311 (A/G*) | Exon 8 | Arg270His | 0.25 | 0.28 | 0.26 | 95.8 |
rs28360457 (A/G*) | Exon 9 | Arg307Gln | 0.023 | 0.015 | 0.012 | 87.2 |
rs1718119 (A/G*) | Exon 11 | Ala348Thr | 0.36 | 0.39 | 0.40 | 93.6 |
rs2230911 (G/C*) | Exon 11 | Thr357Ser | 0.11 | 0.069 | 0.097 | 92.5 |
rs2230912 (G/A*) | Exon 13 | Gln460Arg | 0.076 | 0.15 | 0.16 | 99.0 |
rs3751143 (C/A*) | Exon 13 | Glu496Ala | 0.16 | 0.16 | 0.15 | 92.7 |
rs1653624 (A/T*) | Exon 13 | Ile568Asn | 0.046 | 0.033 | 0.030 | 92.8 |
rs1621388 (A/G*) | Exon 13 | Synonymous | 0.37 | 0.40 | 0.40 | 96.8 |
Data from www.ensembl.org . Minor allele first.
Minor allele first, data from www.hapmap.org.
Ancestral allele in CEU population data (CEPH (Utah residents with ancestry from northern and western Europe)) from www.ncbi.nlm.nih.gov.
MAF, minor allele frequency.