Table 2. The list of FUS-regulated exons with proximal crosslink clusters of FUS. The genomic positions of the exons are shown, as well as the number of FUS, TDP-43 or U2AF65 crosslink sites in crosslink clusters located within 250nt from the middle of the exon. Crosslink clusters were determined using flank = 200 and FDR<0.05.

							cross-linking sites
chr	start	end	strand	Gene	exon type	effect	FUS	TDP-43	U2AF65
chr4	134481443	134481943	+	D4Wsu53e	Cassette		89	13	98
chr16	94614470	94614970	+	Ttc3	Cassette		24	0	19
chr6	38515406	38515906	+	Luc7l2	Cassette		19	2	22
chr10	5917827	5918327	+	Rmnd1	Cassette		17	2	3
chr8	107812815	107813315	−	4931428F04Rik	Cassette		9	0	9
chr11	104179222	104179722	+	Mapt	Cassette		7	2	9
chr5	108497932	108498432	+	Mtf2	Cassette		5	0	7
chr1	183841540	183842040	−	Enah	Cassette		4	0	21
chrX	132277732	132278232	+	Gprasp1	Cassette		2	0	7
chr15	3941706	3942206	−	AW549877	Bleeding		9	5	18
chrX	132376016	132376516	+	Gprasp1	Bleeding		3	0	0
chr11	4979238	4979738	−	Ewsr1	Intron		60	3	31
chr1	58477677	58478177	−	Clk1	Intron		9	0	40
chr9	103258106	103258606	−	Cdv3	3′ variable		3	0	3
chr1	164603984	164604484	−	Bat2d	5′ variable		8	0	12
chr12	71367229	71367729	−	Trim9	Terminal		1	0	8
chr18	38456210	38456710	+	Rnf14	Promoter		2	0	0