Table 1. Genomes searched for DUF1220 domains, NBPF genes, and PDE4DIP.
| Genome | Coverage | PDE4DIP | Total DUF1220 | NBPF Genes | Source | Assembly | Promoter |
|---|---|---|---|---|---|---|---|
| Euarchotanglires | |||||||
| Human | >9X | 2 | 272 | 23 | UCSC | GRCh37 | CM,EVI5, HERV |
| Chimp | 4X + WGS | 3 | 125 | 19 | UCSC + Ensembl | panTro2 | CM,EVI5, HERV |
| Gorilla | 2X + Illumina | 3 | 99 | 15 | Ensemble | gorGor3 | CM,EVI5, HERV |
| Orangutan | 6X | 4 | 92 | 11 | UCSC + Ensembl | ponAbe2 | CM,EVI5 |
| Gibbon | 5.6X | 3 | 53 | 10 | Ensembl | nomLeu1 | CM,EVI5 |
| Macaque | High-BAC | 1 | 35 | 10 | UCSC + Ensembl | rheMac2 | CM,EVI5 |
| Marmoset | 6X + WGS | 1 | 31 | 11 | UCSC | calJac3 | CM,EVI5 |
| Mouse lemur | 1.93X | 1 | 2 | 1 | Ensembl | micMur1 | Seq gap |
| Bushbaby | 1.5X | 1 | 3 | 2 | Ensembl | otoGar1 | |
| Tarsier | 1.83X | 1 | 1 | 0 | Ensembl | tarSyr1 | |
| Rabbit | 7X | 1 | 8 | 3 | UCSC & Ensembl | oriCun2 | CM |
| Pika | 1.93X | 1 | 1 | 0 | Ensembl | ochPri1 | |
| Mouse | High-BAC | 1 | 1 | 0 | UCSC | mm9 | |
| Rat | High-WGS | 1 | 1 | 0 | UCSC | rn4 | |
| Guinea pig | 6.79X | 1 | 1 | 1 | UCSC & Ensembl | cavPor3 | |
| Squirrel | 1.9X | 1 | 1 | 1 | Ensembl | speTri1 | |
| Tree shrew | 2X | 1 | 4 | 3 | Ensembl | tupBel1 | CM |
| Laurasiatheria | |||||||
| Cow | 7X | 1 | 7 | 3 | UCSC & NCBI | bosTau6 | CM |
| Dolphin | 2.59X | 1 | 4 | 1 | Ensembl | turTru1 | CM |
| Pig | 4X | 1 | 3 | 1 | UCSC & Ensembl | susScr2 | CM |
| Horse | 6.79X | 1 | 8 | 3 | UCSC & NCBI | equCab2 | CM |
| Dog | 2005 WGS | 1 | 3 | 1 | UCSC | canFam2 | CM |
| Panda | 56X Illumina | 1 | 2 | 1 | UCSC | ailMel1 | CM |
| Cat | 2.8X | 1 | 3 | 2 | UCSC & Ensembl | felCat4 | CM |
| Megabat | 2.63X | 1 | 1 | 0 | Ensembl | pteVam1 | |
| Microbat | 1.7X | 1 | 1 | 0 | Ensembl | myoLuc1 | |
| Hedgehog | 1.86X | 1 | 1 | 0 | Ensembl | eriEur1 | |
| Shrew | 1.9X | 1 | 1 | 0 | Ensembl | sorAra1 | |
| Xenarthra | |||||||
| Armadillo | 2X | 1 | 1 | 0 | Ensembl | dasNov1 | |
| Sloth | 2.05X | 1 | 1 | 0 | Ensembl | choHof1 | |
| Afrotheria | |||||||
| Elephant | 7X | 1 | 1 | 2 | UCSC & Ensembl | loxAfr3 | CM |
| Hyrax | 2.19X | 1 | 1 | 0 | Ensembl | proCap1 | |
| Tenrec | 2X | 1 | 1 | 0 | Ensembl | echTel1 | |
| Metatheria | |||||||
| Opossum | 7.33X | 1 | 1 | 0 | Ensembl | monDom5 | |
| Wallaby | 2X | 1 | 1 | 0 | Ensembl | Meug1 | |
| Prototheria | |||||||
| Platypus | 6X | 1 | 1 | 0 | UCSC | ornAna1 | |
| Other vertebrate | |||||||
| Chicken | 6.6X | 0 | 0 | 0 | UCSC | galGal3 | |
| Zebra finch | 6X | 0 | 0 | 0 | UCSC | taeGut1 | |
| Lizard | 6.8X | 0 | 0 | 0 | UCSC | anoCar1 | |
| Frog | 7.65X | 0 | 0 | 0 | UCSC | xenTro2 | |
| Zebrafish | 7X | 0 | 0 | 0 | UCSC | danRer6 |
Of the 41 genomes searched, 36 were from mammals, and 5 were from nonmammalian vertebrates.