Table 2.
Top 10 genes up- or down-regulated by active photorespiration in WT and Ljgln2-2.
| WT | |||
|---|---|---|---|
|
| |||
| Probeset | log2 FC | Description | Similar to |
| Up-Regulated | |||
| chr2.TM0641.8 | 1.98 | NAC domain protein | AT1G69490 |
| chr5.CM0341.27 | 1.96 | AP2-EREBP Transcription factor | AT3G23240 |
| chr2.CM0191.49.2 | 1.91 | Polyketide reductase | AT1G59960 |
| Ljwgs_093636.1 | 1.87 | Alpha-dioxygenase | AT3G01420 |
| Ljwgs_050995.1 | 1.77 | Methyltransferase protein | AT3G11480 |
| Ljwgs_080010.1 | 1.73 | Pleiotropic drug resistance protein | AT1G15520 |
| chr4.CM0256.39 | 1.73 | Cytochrome P450 | AT4G37370 |
| chr2.CM0249.88 | 1.72 | Isoflavone reductase | AT4G39230 |
| TM0802.13 | 1.69 | 2-Hydroxyisoflavanone synthase | AT5G06900 |
| Ljwgs_018999.1 | 1.64 | Glutathione S-transferase | AT2G29420 |
| Down-regulated | |||
| Ljwgs_108871.1 | −2.74 | Hypothetical protein | AT3G02550 |
| Ljwgs_035693.2 | −2.46 | Hypothetical protein | AT3G20810 |
| Ljwgs_089359.1.1 | −2.02 | Early flowering 4 protein | AT2G40080 |
| chr3.CM0711.3.2 | −1.93 | Unknown protein | AT4G10270 |
| chr2.CM0191.60 | −1.83 | Nlj21 | - |
| Ljwgs_080939.1 | −1.81 | Beta-glucosidase like protein | AT2G44480 |
| chr3.TM0426.3 | −1.75 | Hypothetical protein | AT5G22580 |
| chr1.CM0398.23.1 | −1.66 | Gibberellin induced protein | AT1G74670 |
| chr3.CM0155.27 | −1.64 | Peroxidase | AT1G05260 |
| TC17223 | −1.64 | Hypothetical protein | - |
|
| |||
| WT | |||
|
| |||
| Ljgln2-2 | |||
| Probeset | log2 FC | Description | Similar to |
|
| |||
| Up-Regulated | |||
| Ljwgs_044797.1 | 5.37 | 60S ribosomal protein | AT1G26910 |
| chr3.CM0590.56 | 4.52 | Chalcone synthase | AT5G13930 |
| Ljwgs_036303.1 | 4.43 | NAC domain protein | AT4G27410 |
| TM0802.13 | 4.35 | 2-Hydroxyisoflavanone synthase | AT5G06900 |
| chr2.CM0250.2 | 4.34 | MYB transcription factor | AT4G37260 |
| gi45637799 | 4.26 | Hypothetical protein | - |
| chr2.CM0018.54 | 4.19 | Chalcone synthase | AT5G13930 |
| Ljwgs_099009.1 | 4.06 | Chalcone synthase | AT5G13930 |
| Ljwgs_093636.1 | 4.04 | Alpha-dioxygenase | AT3G01420 |
| chr5.CM0909.51 | 4.03 | Glutathione S-transferase | AT2G29420 |
| Down-regulated | |||
| chr1.CM0001.63 | −4.66 | Probable 2-Isopropylmalate synthase | AT1G74040 |
| Ljwgs_091497.1 | −2.97 | Myo-inositol-1-phosphate synthase | AT5G10170 |
| TM0810.14 | −2.88 | Cytochrome P450 | AT2G45550 |
| chr1.CM0398.23.1 | −2.80 | Gibberellin regulated protein | AT1G74670 |
| TM1614.14.1 | −2.60 | Hypothetical protein | AT1G59960 |
| Ljwgs_028558.1 | −2.55 | Pectate lyase | AT4G24780 |
| Ljwgs_062989.1 | −2.54 | Terpene synthase | AT4G16730 |
| chr3.CM0142.55 | −2.52 | Hypothetical protein | AT5G20190 |
| chr1.CM0001.70.2 | −2.45 | Hypothetical protein | AT5G13750 |
| Ljwgs_043433.1 | −2.35 | Benzoyl transferase | AT5G17540 |
The table shows the probesets corresponding to the 10 genes that showed higher extent of modulation (FDR < 0.05) in their transcript levels in the leaves of L. japonicus plants after the transfer for 2 days from 0.7% (v/v) CO2 (suppressed photorespiration) to normal air (active photorespiration) conditions as determined by transcriptome analysis using Affymetrix genechips. The log2 of the fold-change is indicated together with the description of the most probable match and the most similar Arabidopsis gene. The following databases were used for the search: the Kazusa DNA research institute (Available online: http://www.kazusa.or.jp/lotus/blast.html; accessed on 16 March 2012), Non-redundant protein sequences (Available online: http://blast.ncbi.nlm.nih.gov/; accessed on 16 March 2012), TAIR (Available online: www.arabidopsis.org; accessed on 16 March 2012) and the Legume transcription factor database (Available online: http://legumetfdb.psc.riken.jp/index.pl; accessed on 16 March 2012).