Table 1.
Distributions of genes in the three main GO domains for the whole genome and assembled viral database
| Number of genes in genome | % of GO domain | Number of genes in virus database | % of virus database | Ratio % of virus/% of GO domain | |
|---|---|---|---|---|---|
|
GO Cellular Component | |||||
|
cell wall |
605 |
2.42 |
302 |
4.94 |
2.04 |
|
chloroplast |
2941 |
11.78 |
1308 |
21.39 |
1.81 |
|
cytosol |
1662 |
6.66 |
918 |
15.01 |
2.25 |
|
ER |
425 |
1.70 |
200 |
3.27 |
1.92 |
|
extracellular |
454 |
1.82 |
233 |
3.81 |
2.09 |
|
Golgi apparatus |
249 |
1.00 |
109 |
1.78 |
1.79 |
|
mitochondria |
1123 |
4.50 |
425 |
6.95 |
1.54 |
|
nucleus |
2504 |
10.03 |
936 |
15.30 |
1.53 |
|
other cellular components |
4405 |
17.65 |
1056 |
17.27 |
0.98 |
|
other cytoplasmic components |
3384 |
13.56 |
1695 |
27.71 |
2.04 |
|
other intracellular components |
4310 |
17.27 |
1914 |
31.29 |
1.81 |
|
other membranes |
3373 |
13.52 |
1358 |
22.20 |
1.64 |
|
plasma membrane |
1862 |
7.46 |
908 |
14.85 |
1.99 |
|
ribosome |
472 |
1.89 |
232 |
3.79 |
2.01 |
|
unknown cellular components |
9632 |
38.60 |
1024 |
16.74 |
0.43 |
|
Total |
24956 |
100.00 |
6116 |
100.00 |
|
|
GO Molecular Function |
|
|
|
|
|
|
DNA or RNA binding |
2894 |
10.59 |
693 |
10.03 |
0.95 |
|
hydrolase activity |
2959 |
10.82 |
913 |
13.22 |
1.22 |
|
kinase activity |
1342 |
4.91 |
426 |
6.17 |
1.26 |
|
nucleic acid binding |
1467 |
5.37 |
216 |
3.13 |
0.58 |
|
nucleotide binding |
2114 |
7.73 |
655 |
9.48 |
1.23 |
|
other binding |
4529 |
16.57 |
1258 |
18.21 |
1.10 |
|
other enzyme activity |
3200 |
11.70 |
1157 |
16.75 |
1.43 |
|
other molecular functions |
1003 |
3.67 |
311 |
4.50 |
1.23 |
|
protein binding |
2426 |
8.87 |
1090 |
15.78 |
1.78 |
|
receptor binding or activity |
271 |
0.99 |
88 |
1.27 |
1.29 |
|
structural molecule activity |
536 |
1.96 |
252 |
3.65 |
1.86 |
|
transcription factor activity |
1681 |
6.15 |
450 |
6.52 |
1.06 |
|
transferase activity |
2509 |
9.18 |
870 |
12.60 |
1.37 |
|
transporter activity |
1266 |
4.63 |
420 |
6.08 |
1.31 |
|
unknown molecular functions |
10851 |
39.69 |
1651 |
23.90 |
0.60 |
|
Total |
27340 |
100.00 |
6907 |
100.00 |
|
|
GO Biological Process |
|
|
|
|
|
|
cell organization and biogenesis |
1245 |
4.44 |
440 |
6.23 |
1.40 |
|
developmental processes |
2309 |
8.24 |
758 |
10.73 |
1.30 |
|
DNA or RNA metabolism |
444 |
1.58 |
114 |
1.61 |
1.02 |
|
electron transport or energy pathways |
294 |
1.05 |
151 |
2.14 |
2.04 |
|
other biological processes |
2157 |
7.70 |
965 |
13.66 |
1.78 |
|
other cellular processes |
12254 |
43.72 |
3950 |
55.93 |
1.28 |
|
other metabolic processes |
12875 |
45.93 |
4092 |
57.94 |
1.26 |
|
protein metabolism |
4256 |
15.18 |
1252 |
17.73 |
1.17 |
|
response to abiotic or biotic stimulus |
2175 |
7.76 |
1037 |
14.68 |
1.89 |
|
response to stress |
2424 |
8.65 |
1097 |
15.53 |
1.80 |
|
signal transduction |
1366 |
4.87 |
431 |
6.10 |
1.25 |
|
transport |
2080 |
7.42 |
726 |
10.28 |
1.39 |
|
unknown biological processes |
11282 |
40.25 |
1800 |
25.48 |
0.63 |
| Total | 28031 | 100.00 | 7063 | 100.00 | |