Table 1.
List of TDFs modulated in P. ramosa conditioned seeds treated for 2h or 6h with GR24
| TDF no. | Regulationa | Best Arabidopsis hit (Accession no.) | Functional category | E value | |
|---|---|---|---|---|---|
| 2 h | 6 h | ||||
| 1 | + | + | Sulphite reductase (NP_196079) | Oxidation–reduction processes | 2.00E–08 |
| 3 | + | + | 60S ribosomal protein L8-3 (NP_195336) | Translation | 3.00E–12 |
| 5 | + | O | Sucrose synthase 3 (NP_192137) | Carbohydrate metabolic processes | 6.00E–30 |
| 6 | – | – | High mobility group (HMG1/2) domain-containing rotein (NP_565788) | Nucleotide binding | 8.00E–17 |
| 7 | O | – | Ninja-family protein AFP3 (NP_189598) | Nucleotide binding | 7.00E–19 |
| 8 | O | + | Peptidylprolyl isomerase ROF2 (NP_199668) | Response to stress | 6.00E–22 |
| 11 | O | + | Heat shock protein 81.4 (NP_200411) | Response to stress | 3.00E–65 |
| 13 | O | + | PPPDE putative thiol peptidase family protein (NP_187365) | Unknown | 1.00E–24 |
| 14 | O | + | Rossmann-fold NAD(P)-binding domain-containing protein (NP_175552) | Oxidation–reduction processes | 1.00E–16 |
| 15 | + | O | Aldolase-type TIM barrel family protein (AED97862) | Response to stress | 8.00E–15 |
| 16 | + | + | Phosphatidylethanolamine-binding protein (NP_195750) | Unknown | 0.001 |
| 20 | + | O | Trans-cinnamate 4-monooxygenase (NP_180607) | Secondary metabolic processes | 0.006 |
| 26 | + | O | HIPL2 protein (NP_201069) | Carbohydrate metabolic processes | 3.00E–08 |
| 28 | + | + | Methionine synthase 2 (NP_001118564) | Cellular amino acid metabolic processes | 3.00E–21 |
| 30 | + | + | Abscisic acid 8'-hydroxylase 1 (NP_974574 ) | Response to stress | 0.007 |
| 31 | + | O | Acetylornithine deacetylase (NP_001190758) | Protein metabolic processes | 0.091 |
| 32 | – | – | 26S proteasome regulatory subunit 4-A (NP_194633) | Protein metabolic processes | 1 |
| 33 | + | + | RNA recognition motif-containing protein (NP_197436) | Nucleotide binding | 2.00E–23 |
| 36 | O | + | Heat shock 70kDa protein 1 (NP_195870) | Response to stress | 0.073 |
| 37 | + | + | Abscisic acid 8'-hydroxylase 1 (NP_974574) | Response to stress | 0.001 |
| 38 | O | – | BI1-like protein (NP_567466) | Unknown | 3.00E–16 |
| 39 | + | + | Heat shock protein 81-1 (NP_200076) | Response to stress | 3.00E–23 |
| 40 | + | O | Putative aquaporin TIP3-2 (NP_173223) | Transport | 6.00E–50 |
| 41 | + | + | Beta-glucosidase 44 (NP_188436) | Carbohydrate metabolic processes | 5.00E–41 |
| 42 | + | + | 5-methyltetrahydropteroyltriglutamate homocysteine methyltransferase (NP_197294) | Cellular amino acid metabolic processes | 1.00E–16 |
| 44 | O | + | Glutathione S-transferase PM24 (NP_192161) | Response to stress | 6.00E–06 |
| 45 | O | + | Heat shock protein 21 (NP_194497) | Response to stress | 0.02 |
| 48 | + | O | Splicing factor U2af large subunit B (NP_176287) | Nucleotide binding | 1.00E–06 |
| 49 | + | O | Catalase 2 (NP_195235) | Response to stress | 1.00E–48 |
| 50 | + | O | Heat shock protein 70B (NP_173055) | Response to stress | 1.00E–79 |
| 51 | + | O | Phenylalanine ammonia-lyase 3 (NP_001190223) | Response to stress | 6.00E–10 |
| 58 | O | + | Putative xyloglucan glycosyltransferase 8 (NP_180039) | Carbohydrate metabolic processes | 1.00E–26 |
aCompared with the non-treated control sample, (+) corresponds to an up-regulation, (–) a down-regulation, and (O) no change